Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CCDC40	Gene	0	7.76	13.08	6.17	7.64	9.78	3.95	1.30
2	374876	Transcript	0	1.66	1.15	0.14	0.00	1.35	0.35	0.00
3	269318	Transcript	0	3.39	3.38	2.68	2.56	2.85	1.05	0.98
4	374877	Transcript	0	1.51	2.28	0.26	1.44	1.12	0.34	0.00
5	397545	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	269336	Transcript	0	5.65	4.45	1.60	3.25	1.88	0.07	0.36
7	ER1a	ExonRegion	0	0.00	1.21	0.68	1.25	0.61	0.00	0.00
8	ER1b	ExonRegion	0	0.67	4.91	1.03	2.60	4.54	0.23	0.00
9	E1a_E2a	KnownJunction	0	6.56	11.95	2.74	3.01	7.79	1.07	0.00
10	I1_AR2	ActiveIntronRegion	0	8.72	1.06	12.85	3.61	3.20	1.54	2.72
11	I1_SR2	SilentIntronRegion	0	8.25	0.89	16.84	3.27	1.59	0.86	0.81
12	E2_Aa	NovelBoundary	0	8.63	2.81	12.60	4.63	4.40	1.66	3.90
13	ER2a	ExonRegion	0	2.73	15.76	2.09	7.07	9.59	2.22	0.84
14	E2_Da	NovelBoundary	0	11.93	0.00	25.44	3.17	1.18	1.34	1.75
15	E2a_E3a	KnownJunction	0	7.69	14.16	2.04	11.59	7.12	3.06	2.42
16	ER3a	ExonRegion	0	18.99	28.52	11.27	16.31	19.45	6.60	6.10
17	E3_Da	NovelBoundary	0	4.47	12.01	4.11	4.47	13.28	1.13	1.61
18	E3a_E4a	KnownJunction	0	3.66	7.17	4.43	2.76	5.35	5.98	2.24
19	ER4a	ExonRegion	0	3.79	8.87	2.33	6.11	9.81	5.54	0.88
20	E4_Da	NovelBoundary	0	7.18	12.56	3.97	7.67	4.66	1.26	0.00
21	E4a_E5b	KnownJunction	0	4.04	5.78	1.72	2.57	8.39	5.07	0.00
22	I4	Intron	0	9.06	7.86	5.28	4.67	3.63	3.32	1.26
23	I4_AR1	ActiveIntronRegion	0	7.85	9.32	3.88	4.77	3.61	4.01	0.44
24	I4_SR1	SilentIntronRegion	0	9.64	7.81	6.02	4.15	3.29	3.65	1.65
25	E5_Aa	NovelBoundary	0	14.50	7.41	6.93	8.13	6.25	0.00	1.42
26	ER5a	ExonRegion	0	5.65	4.45	1.60	3.25	1.88	0.07	0.36
27	E5_Ab	KnownBoundary	0	8.48	7.20	4.60	5.85	0.00	0.00	0.89
28	ER5b	ExonRegion	0	14.33	21.46	12.01	12.85	11.55	5.21	2.03
29	E5a_E6a	KnownJunction	0	13.07	35.76	9.28	12.52	11.53	5.17	4.70
30	ER6a	ExonRegion	0	9.46	25.31	10.68	10.50	14.55	4.06	2.53
31	E6_Da	NovelBoundary	0	8.86	10.61	4.05	5.42	2.12	0.00	0.70
32	E6a_E7a	KnownJunction	0	4.91	13.53	8.21	10.32	13.85	4.72	2.54
33	E7_Aa	NovelBoundary	0	11.75	9.30	4.64	2.60	0.99	0.00	1.38
34	ER7a	ExonRegion	0	7.76	11.84	4.80	8.25	12.77	3.78	1.40
35	E7a_E8a	KnownJunction	0	9.23	10.51	9.63	7.83	15.88	6.86	0.73
36	ER8a	ExonRegion	0	16.87	24.65	12.08	14.85	24.37	8.02	4.15
37	E8a_E9a	KnownJunction	0	23.18	34.94	18.18	10.94	20.45	5.04	3.81
38	E8a_E11a	KnownJunction	0	0.58	0.00	0.00	0.00	0.00	0.00	0.00
39	ER9a	ExonRegion	0	15.74	27.23	14.09	12.24	22.41	10.80	3.72
40	E9a_E10a	KnownJunction	0	13.47	14.27	9.87	4.63	22.61	6.06	0.80
41	ER10a	ExonRegion	0	14.04	22.46	9.41	4.87	16.68	4.06	0.83
42	E10_Da	NovelBoundary	0	2.60	10.30	0.89	1.16	5.14	6.19	0.86
43	E10a_E12a	KnownJunction	0	2.77	2.99	2.59	1.65	0.00	1.42	1.58
44	E10a_E13a	KnownJunction	0	7.26	10.43	2.63	3.96	9.59	6.57	0.59
45	E11_Aa	NovelBoundary	0	3.10	9.25	4.47	5.31	3.32	3.48	2.42
46	ER11a	ExonRegion	0	2.73	2.31	0.29	0.00	2.71	0.69	0.00
47	I11_AR2	ActiveIntronRegion	0	4.27	7.86	1.85	5.38	4.06	2.28	0.12
48	I11_SR2	SilentIntronRegion	0	4.65	12.56	3.18	7.71	13.09	1.62	0.66
49	ER12a	ExonRegion	0	4.01	3.77	2.78	3.47	5.71	0.67	0.38
50	ER13a	ExonRegion	0	8.17	14.45	3.91	4.01	9.58	3.06	1.90
51	E13a_E14a	KnownJunction	0	3.57	11.82	6.64	2.57	3.37	1.21	0.00
52	E14_Aa	NovelBoundary	0	1.79	6.41	3.64	4.39	7.33	7.85	2.68
53	ER14a	ExonRegion	0	8.73	16.83	8.68	8.48	13.13	5.12	0.93
54	E14a_E15a	KnownJunction	0	9.33	18.18	15.99	9.16	6.29	4.72	1.52
55	ER15a	ExonRegion	0	6.30	8.26	6.31	5.75	6.41	1.72	0.94
56	E15a_E16a	KnownJunction	0	2.57	1.31	3.35	0.00	6.36	2.57	0.62
57	ER16a	ExonRegion	0	4.28	6.64	5.48	5.72	6.92	1.70	0.76
58	E16a_E17a	KnownJunction	0	3.59	13.00	9.50	12.84	10.88	2.97	0.00
59	ER17a	ExonRegion	0	6.19	12.49	6.29	8.10	12.33	4.60	0.59
60	E17a_E18a	KnownJunction	0	6.44	7.59	5.29	4.82	10.49	1.37	0.00
61	ER18a	ExonRegion	0	5.03	5.28	5.54	6.75	9.46	3.37	0.00
62	E18a_E19a	KnownJunction	0	6.26	6.12	3.89	6.18	10.72	4.29	0.00
63	ER19a	ExonRegion	0	6.44	6.85	2.52	3.75	6.99	6.13	0.00
64	E19a_E20a	KnownJunction	0	1.90	1.34	0.50	1.65	1.06	0.00	0.00
65	E19a_E21a	KnownJunction	0	1.85	2.89	1.83	1.27	5.49	2.12	0.00
66	ER20a	ExonRegion	0	1.11	3.22	0.01	1.22	1.17	0.69	0.00
67	E20_Da	NovelBoundary	0	5.62	8.77	1.32	0.00	4.36	0.00	0.87
68	ER21a	ExonRegion	0	5.41	7.24	3.03	8.29	6.89	6.58	0.00
69	E21a_E22a	KnownJunction	0	3.84	8.41	1.16	6.15	7.56	2.71	0.00
70	ER22a	ExonRegion	0	8.14	13.56	5.13	9.82	12.44	4.74	0.00
71	E22a_E23a	KnownJunction	0	2.82	10.69	2.05	4.98	8.78	1.66	0.00
72	ER23a	ExonRegion	0	4.65	10.41	6.16	6.86	5.31	3.38	0.09
73	ER23b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00