Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	HN1	Gene	0	21.75	59.05	16.18	19.48	139.08	29.60	64.71
2	409753	Transcript	0	0.00	0.00	0.00	0.00	5.04	0.00	0.40
3	304834	Transcript	0	0	0	0	0	0	0	0
4	392573	Transcript	0	3.22	5.00	1.68	1.62	12.72	0.98	3.83
5	356033	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	409135	Transcript	0	0.99	0.00	0.44	0.05	1.98	0.00	0.83
7	IG12_AR8	ActiveIntergenicRegion	0	20.63	18.92	48.13	14.94	122.53	18.84	43.83
8	IG12_SR12	SilentIntergenicRegion	0	0.17	2.59	0.73	7.06	0.37	17.94	0.05
9	IG12_AR7	ActiveIntergenicRegion	0	1.27	4.21	2.61	14.62	8.49	29.00	0.49
10	IG12_SR11	SilentIntergenicRegion	0	4.63	4.80	3.67	3.54	3.39	8.70	0.92
11	IG12_SR10	SilentIntergenicRegion	0	8.92	3.12	7.33	3.74	11.94	2.20	2.71
12	IG12_AR5	ActiveIntergenicRegion	0	134.36	37.85	110.99	24.99	1782.34	39.54	48.05
13	IG12_SR4	SilentIntergenicRegion	0	4.09	2.07	2.16	1.87	8.95	1.45	4.23
14	IG12_AR3	ActiveIntergenicRegion	0	18.29	13.32	25.52	10.57	55.09	16.73	13.51
15	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER1b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	ER1c	ExonRegion	0	0.00	1.07	0.00	0.55	0.24	0.54	0.29
18	E1_Ad	KnownBoundary	0	0.62	0.00	0.00	2.90	0.00	0.00	0.00
19	ER1d	ExonRegion	0	0.01	2.30	0.34	0.19	0.52	0.00	2.26
20	E1a_E2a	KnownJunction	0	0.00	5.20	0.00	1.52	0.00	0.00	0.63
21	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	Ix_AR4	ActiveIntronRegion	0	5.75	5.43	4.59	6.62	3.75	10.50	3.09
23	ER2a	ExonRegion	0	7.24	4.18	4.14	1.94	28.44	1.47	7.16
24	E2_Da	NovelBoundary	0	4.64	7.38	10.76	5.31	12.26	9.38	18.33
25	E2a_E3a	KnownJunction	0	2.42	5.62	0.89	1.41	9.73	1.47	3.68
26	Ix	Intron	0	9.95	3.92	11.93	7.33	7.84	6.27	20.95
27	Ix_AR1	ActiveIntronRegion	0	10.52	4.26	12.92	8.03	8.14	6.57	22.35
28	ER3a	ExonRegion	0	1.86	4.90	0.64	2.45	3.26	4.61	2.08
29	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER4a	ExonRegion	0	2.39	0.00	0.88	0.03	4.29	2.20	0.87
31	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	E4a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	E4a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	E4a_E7c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	15.13	0.00	1.21
36	Ix	Intron	0	10.98	4.58	2.96	3.42	21.45	3.37	11.38
37	Ix_AR1	ActiveIntronRegion	0	14.69	5.59	4.12	4.07	27.81	4.34	16.03
38	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	Ix_SR1	SilentIntronRegion	0	9.53	2.43	2.77	1.35	11.84	2.40	5.41
40	E7_Aa	NovelBoundary	0	14.34	2.52	5.66	2.79	15.28	3.94	5.90
41	ER7a	ExonRegion	0	1.98	0.00	0.89	0.10	3.96	0.00	1.66
42	ER7b	ExonRegion	0	4.61	0.00	2.03	2.49	21.06	0.00	5.40
43	ER7c	ExonRegion	0	12.23	11.75	6.89	4.69	59.20	6.51	19.24
44	E7_Da	KnownBoundary	1	14.35	58.93	5.39	24.95	15.17	26.32	43.75
45	ER7d	ExonRegion	0	57.63	118.33	36.82	38.56	305.49	55.86	136.16
46	E7_Db	KnownBoundary	0	59.70	154.69	40.80	56.95	491.69	83.56	166.98
47	ER7e	ExonRegion	0	27.56	115.24	26.55	37.89	240.00	59.74	119.73