Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	FBF1	Gene	0	8.05	3.57	4.53	2.64	12.67	5.62	12.44
2	389570	Transcript	0	2.80	0.52	1.45	0.26	3.15	0.67	5.36
3	319129	Transcript	0	6.65	0.70	2.83	1.88	8.92	5.47	9.87
4	337792	Transcript	0	0.26	1.27	0.24	0.00	2.06	1.26	0.24
5	ER1a	ExonRegion	0	1.63	0.00	1.35	0.48	2.59	2.93	1.30
6	E1a_E2a	KnownJunction	0	7.24	0.00	4.10	0.00	0.92	0.00	3.51
7	ER2a	ExonRegion	0	11.32	3.88	5.78	2.96	12.91	2.75	8.53
8	E3a_E4a	KnownJunction	0	9.10	0.00	2.83	0.00	11.00	2.47	15.46
9	E3a_E5a	KnownJunction	0	7.48	0.00	4.15	3.01	9.38	4.23	4.00
10	ER3a	ExonRegion	0	15.04	1.26	6.89	4.50	17.41	8.28	20.50
11	ER4a	ExonRegion	0	9.92	1.91	5.68	0.92	10.26	2.95	20.77
12	E4a_E5a	KnownJunction	0	8.81	3.26	5.91	1.68	8.32	1.07	16.88
13	ER5a	ExonRegion	0	18.03	2.89	9.04	2.45	22.54	10.69	19.02
14	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	E5b_E6a	KnownJunction	0	14.00	4.31	11.60	1.27	21.60	17.10	17.53
16	ER5b	ExonRegion	0	12.72	4.32	11.06	1.25	20.16	15.80	19.11
17	ER6a	ExonRegion	0	12.50	4.98	10.60	0.49	13.63	12.42	20.80
18	E6a_E7a	KnownJunction	0	10.26	3.91	7.17	1.03	7.35	4.42	16.42
19	ER7a	ExonRegion	0	10.26	5.15	7.74	2.18	17.20	6.78	17.42
20	E7a_E8a	KnownJunction	0	10.06	6.04	6.60	2.98	20.56	8.50	16.40
21	ER8a	ExonRegion	0	14.93	3.46	11.35	2.25	24.21	9.70	20.78
22	E8a_E9a	KnownJunction	0	14.42	2.63	10.22	0.00	17.54	2.39	21.01
23	E8b_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	ER8b	ExonRegion	0	0.06	0.00	0.00	0.00	0.07	0.00	0.03
25	ER9a	ExonRegion	0	9.10	0.65	7.40	2.83	12.25	4.24	14.05
26	E9a_E10a	KnownJunction	0	8.68	1.26	5.82	4.90	11.73	8.84	9.96
27	ER10a	ExonRegion	0	9.87	3.56	5.67	5.67	16.04	3.76	12.47
28	E10a_E11a	KnownJunction	0	5.91	5.62	4.17	3.03	13.35	6.43	16.74
29	ER11a	ExonRegion	0	10.85	4.52	5.77	3.73	10.97	4.24	11.71
30	E11a_E12a	KnownJunction	0	9.61	2.60	4.18	4.61	8.46	3.81	12.94
31	ER12a	ExonRegion	0	8.75	3.99	6.76	4.35	9.94	3.01	11.09
32	E12a_E13a	KnownJunction	0	10.83	6.12	8.61	2.49	12.52	0.00	14.03
33	E12b_E13b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	ER12b	ExonRegion	0	0.00	0.00	0.02	0.00	0.03	0.18	0.22
35	ER13a	ExonRegion	0	10.30	5.10	7.59	3.74	11.82	0.74	13.22
36	ER13b	ExonRegion	0	8.44	4.55	4.09	1.65	12.63	3.96	15.04
37	E13a_E14a	KnownJunction	0	3.74	2.29	1.55	0.00	3.18	4.58	6.56
38	E13a_E14b	KnownJunction	0	3.89	0.00	2.16	2.14	10.67	1.45	7.98
39	ER14a	ExonRegion	0	5.57	2.43	1.86	0.31	5.26	3.98	9.95
40	ER14b	ExonRegion	0	9.03	4.24	5.00	3.21	13.65	6.45	15.31
41	E14a_E15a	KnownJunction	0	10.46	2.73	2.83	1.68	15.54	4.10	11.81
42	ER15a	ExonRegion	0	10.19	4.28	7.40	1.54	13.54	7.93	18.34
43	E15a_E16a	KnownJunction	0	13.27	1.31	11.12	1.06	25.29	6.16	16.24
44	ER16a	ExonRegion	0	5.55	5.13	4.40	4.61	14.21	7.48	19.70
45	E16a_E17a	KnownJunction	0	12.60	5.36	5.02	6.96	28.89	10.45	20.62
46	ER17a	ExonRegion	0	8.39	4.80	4.09	2.62	20.53	8.69	14.37
47	E17a_E18a	KnownJunction	0	12.43	7.99	5.10	0.00	15.12	6.86	11.57
48	ER18a	ExonRegion	0	6.40	6.00	3.48	1.77	9.99	2.31	13.67
49	E18a_E19a	KnownJunction	0	6.08	5.20	2.57	0.00	5.30	0.00	9.82
50	ER19a	ExonRegion	0	5.80	5.89	4.11	3.02	9.29	4.50	12.76
51	E19a_E20a	KnownJunction	0	9.38	10.17	5.20	5.66	12.61	4.07	13.13
52	ER20a	ExonRegion	0	11.62	4.78	4.72	4.32	14.55	5.77	14.13
53	E20a_E21a	KnownJunction	0	9.48	2.52	2.64	5.58	9.52	3.11	12.05
54	ER21a	ExonRegion	0	3.93	3.78	2.65	5.35	11.90	5.74	10.06
55	E21a_E22a	KnownJunction	0	4.34	0.00	2.03	2.79	21.88	2.63	12.73
56	ER22a	ExonRegion	0	6.24	2.17	2.62	4.11	12.09	4.25	10.61
57	E22a_E23a	KnownJunction	0	5.61	1.23	0.72	2.82	7.31	5.63	7.47
58	ER23a	ExonRegion	0	3.48	2.19	0.93	1.00	9.27	4.32	5.43
59	E23_Da	KnownBoundary	0	4.07	2.86	3.68	1.41	13.88	3.56	8.86
60	E23a_E30a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
61	ER23b	ExonRegion	0	6.51	2.97	3.35	1.99	12.51	5.35	11.52
62	E23b_E24a	KnownJunction	0	6.68	1.42	3.16	2.52	2.90	8.87	13.13
63	E23b_E24b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	ER24a	ExonRegion	0	5.28	1.40	2.25	2.86	11.57	5.52	6.92
65	E24_Ab	KnownBoundary	0	7.78	0.00	3.16	2.74	10.44	4.40	8.66
66	ER24b	ExonRegion	0	9.99	0.03	3.71	1.25	11.44	4.16	11.13
67	E24_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
68	E24a_E24c	KnownJunction	0	10.75	0.00	3.75	0.00	10.54	6.06	11.47
69	ER24c	ExonRegion	0	0.14	0.00	0.04	0.00	1.82	0.06	0.21
70	E24_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	1.18	0.00	0.00
71	ER24d	ExonRegion	0	5.54	1.02	2.33	0.72	7.35	3.08	9.69
72	E24b_E25a	KnownJunction	0	6.69	0.00	2.49	2.90	4.47	4.96	9.03
73	ER25a	ExonRegion	0	5.52	5.31	3.52	1.39	10.38	4.76	11.54
74	E25a_E26a	KnownJunction	0	14.04	5.86	3.79	0.00	12.10	5.28	15.22
75	ER26a	ExonRegion	0	9.61	7.19	3.94	2.02	14.64	6.93	15.26
76	E26a_E27a	KnownJunction	0	11.00	8.98	2.01	0.00	23.26	8.09	14.63
77	ER27a	ExonRegion	0	10.69	3.01	4.56	1.99	15.61	8.38	16.26
78	E27a_E28a	KnownJunction	0	14.92	2.52	5.35	4.17	18.65	12.81	22.83
79	ER28a	ExonRegion	0	7.94	2.87	6.54	4.30	22.54	10.86	14.23
80	E28a_E29a	KnownJunction	0	8.31	2.52	5.16	2.57	24.00	13.32	19.20
81	ER29a	ExonRegion	0	9.98	4.24	4.22	3.60	17.83	9.03	13.09
82	E29_Da	NovelBoundary	0	17.64	1.63	6.45	6.94	14.73	11.26	15.56
83	I29	Intron	0	6.86	4.10	6.48	2.00	9.90	7.26	11.56
84	I29_AR1	ActiveIntronRegion	0	6.89	4.11	6.51	2.01	9.94	7.29	11.61
85	ER30a	ExonRegion	0	0.51	2.54	0.47	0.00	4.12	2.52	0.47