Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	NF1	Gene	0	150.40	76.67	179.01	122.17	85.62	86.03	135.05
2	358273	Transcript	0	43.63	35.27	68.81	51.37	34.20	36.72	53.63
3	356175	Transcript	0	33.50	34.97	30.01	59.41	21.28	22.06	14.02
4	IG33_AR3	ActiveIntergenicRegion	0	0.21	1.92	3.22	9.49	1.63	6.74	0.55
5	IG33_AR4	ActiveIntergenicRegion	0	0.00	4.86	0.00	7.69	0.00	8.17	0.00
6	IG33_AR16	ActiveIntergenicRegion	0	1.40	1.88	7.11	12.11	3.31	2.23	3.27
7	ER1a	ExonRegion	0	7.17	13.97	9.06	17.53	1.76	12.61	5.82
8	E1a_E2a	KnownJunction	0	22.88	37.38	45.61	56.02	7.56	30.52	28.58
9	ER2a	ExonRegion	0	53.11	64.33	80.16	67.26	12.82	44.34	48.76
10	E2a_E3a	KnownJunction	0	101.41	54.99	129.38	67.67	16.74	41.41	55.43
11	ER3a	ExonRegion	0	98.10	70.61	145.40	91.12	22.54	61.46	70.72
12	E3a_E4a	KnownJunction	0	97.35	102.64	155.73	117.17	18.97	69.81	76.83
13	ER4a	ExonRegion	0	139.42	97.27	182.45	116.19	33.04	63.42	88.99
14	E4_Da	NovelBoundary	1	50.79	0.00	57.64	2.76	1.13	1.05	3.47
15	E4a_E5a	KnownJunction	0	117.86	86.07	154.09	114.32	35.69	49.93	71.06
16	ER5a	ExonRegion	0	123.22	85.85	167.19	110.33	31.82	54.85	100.49
17	E5a_E6a	KnownJunction	0	114.86	65.05	139.46	93.55	29.97	48.51	84.30
18	ER6a	ExonRegion	0	131.71	81.07	171.78	97.32	35.78	45.90	101.04
19	E6a_E7a	KnownJunction	0	145.52	107.69	201.27	119.85	49.26	60.94	116.16
20	ER7a	ExonRegion	0	117.10	96.26	178.56	113.64	42.74	58.62	127.19
21	E7a_E8a	KnownJunction	0	100.92	75.90	123.53	107.06	30.25	43.76	115.45
22	ER8a	ExonRegion	0	133.82	97.71	177.04	126.83	42.34	66.27	127.17
23	E8a_E9a	KnownJunction	0	152.86	109.42	174.57	151.79	52.54	74.18	127.15
24	ER9a	ExonRegion	0	246.38	128.06	242.46	198.22	81.47	86.18	173.17
25	E9a_E10a	KnownJunction	0	168.47	130.28	185.38	186.71	52.51	79.76	120.87
26	ER10a	ExonRegion	0	238.15	138.08	241.88	193.87	101.61	89.02	200.49
27	E10a_E11a	KnownJunction	0	140.16	125.71	169.33	149.41	59.48	83.48	185.49
28	ER11a	ExonRegion	0	111.66	135.92	158.10	133.49	42.59	85.98	141.72
29	E11a_E12a	KnownJunction	0	96.22	98.68	138.11	116.38	46.84	73.32	115.80
30	ER12a	ExonRegion	0	113.75	107.91	162.82	122.41	46.98	80.52	161.41
31	E12a_E13a	KnownJunction	0	91.11	86.64	165.07	118.01	35.85	67.75	146.65
32	ER13a	ExonRegion	0	109.76	76.46	145.24	103.90	41.67	68.30	117.32
33	E13a_E14a	KnownJunction	0	106.92	77.68	167.52	111.75	38.41	73.99	115.57
34	ER14a	ExonRegion	0	91.36	68.23	132.25	100.37	32.88	67.77	106.60
35	E14a_E15a	KnownJunction	0	88.94	60.66	103.61	84.25	44.12	54.08	79.21
36	E14a_E16a	NovelJunction	0	3.20	8.54	2.69	3.25	0.00	1.50	0.00
37	ER15a	ExonRegion	0	117.99	59.29	135.15	78.47	44.77	52.33	86.26
38	E15a_E16a	KnownJunction	0	116.46	41.46	135.74	68.51	37.05	49.71	73.13
39	ER16a	ExonRegion	0	177.47	60.59	189.51	107.40	55.95	76.98	95.86
40	E16a_E17a	KnownJunction	1	317.76	51.68	281.14	168.15	55.19	92.43	140.46
41	ER17a	ExonRegion	0	195.40	74.50	184.96	147.16	47.63	87.45	116.14
42	E17a_E18a	KnownJunction	0	227.92	89.06	213.34	147.81	68.19	87.37	151.60
43	ER18a	ExonRegion	0	85.43	73.43	107.61	117.57	41.25	58.22	117.24
44	E18a_E19a	KnownJunction	0	67.68	71.51	109.40	108.74	37.05	58.24	110.82
45	E18a_E20a	NovelJunction	0	0.00	13.29	1.29	6.39	3.39	3.64	0.00
46	ER19a	ExonRegion	0	74.59	74.75	117.20	115.26	41.95	62.24	115.78
47	E19a_E20a	KnownJunction	0	85.39	69.49	117.43	111.75	36.03	59.01	115.21
48	ER20a	ExonRegion	0	98.69	76.10	139.94	128.60	49.58	72.92	144.15
49	E20a_E21a	KnownJunction	0	116.58	76.95	156.22	139.52	39.01	88.33	147.91
50	ER21a	ExonRegion	0	104.33	82.68	145.65	128.48	47.63	60.99	119.13
51	E21a_E22a	KnownJunction	0	154.13	75.40	183.31	107.44	62.17	60.81	137.87
52	ER22a	ExonRegion	0	153.08	88.03	196.33	104.77	69.74	68.37	129.04
53	E22a_E23a	KnownJunction	0	167.82	79.16	201.23	110.64	78.77	66.06	129.53
54	ER23a	ExonRegion	0	130.66	103.27	178.51	109.06	63.73	72.60	131.64
55	E23a_E24a	KnownJunction	0	152.08	125.55	207.67	115.27	75.84	68.77	157.67
56	ER24a	ExonRegion	0	173.85	104.39	213.92	137.42	95.77	80.07	156.85
57	E24a_E25a	KnownJunction	0	148.96	87.51	180.97	133.32	89.35	74.32	151.33
58	ER25a	ExonRegion	0	193.67	99.93	206.11	140.29	100.29	73.00	159.96
59	E25a_E26a	KnownJunction	0	248.78	92.95	228.83	161.84	109.64	97.12	161.39
60	ER26a	ExonRegion	0	282.75	115.91	242.89	177.79	122.00	91.37	183.60
61	E26a_E27a	KnownJunction	0	315.21	146.49	253.32	193.21	139.72	85.95	188.97
62	ER27a	ExonRegion	0	309.56	127.86	290.30	200.64	118.44	104.24	193.09
63	E27a_E28a	KnownJunction	0	247.11	61.40	228.62	147.73	88.13	89.73	145.78
64	ER28a	ExonRegion	0	188.64	79.87	221.68	151.34	108.29	98.65	165.98
65	E28a_E29a	KnownJunction	0	306.31	96.31	346.04	134.24	108.49	122.56	205.83
66	ER29a	ExonRegion	0	179.79	87.74	236.76	157.62	62.09	106.87	171.72
67	E29a_E30a	KnownJunction	0	125.47	89.14	150.50	152.36	55.74	80.88	120.00
68	ER30a	ExonRegion	0	229.32	81.41	259.72	158.83	104.38	90.87	182.14
69	E30a_E31a	KnownJunction	0	67.98	35.47	98.36	51.53	42.60	29.83	84.01
70	E30a_E32a	KnownJunction	1	33.50	34.97	30.01	59.41	21.28	22.06	14.02
71	ER31a	ExonRegion	0	35.15	33.71	56.73	48.20	24.41	39.06	45.57
72	E31a_E32a	KnownJunction	0	27.76	36.65	51.35	54.37	35.59	41.27	31.30
73	ER32a	ExonRegion	0	160.31	88.25	184.17	121.59	76.59	80.24	133.76
74	E32a_E33a	KnownJunction	0	208.26	73.80	241.25	94.55	81.31	71.72	136.55
75	ER33a	ExonRegion	0	222.16	79.45	242.86	113.47	111.44	99.29	148.93
76	E33a_E34a	KnownJunction	0	234.64	63.47	238.62	82.09	112.29	56.65	123.88
77	ER34a	ExonRegion	0	290.44	104.66	277.21	146.06	109.14	78.79	155.31
78	E34a_E35a	KnownJunction	0	265.39	85.04	270.39	133.72	96.45	65.10	138.40
79	ER35a	ExonRegion	0	219.81	84.09	240.02	119.43	107.51	60.62	137.67
80	E35a_E36a	KnownJunction	0	177.28	72.98	206.17	78.48	95.14	64.86	118.76
81	ER36a	ExonRegion	0	226.80	78.64	265.34	109.81	98.07	74.40	140.11
82	E36a_E37a	KnownJunction	0	230.19	75.24	245.83	105.28	86.29	95.70	126.88
83	ER37a	ExonRegion	0	252.41	100.57	273.18	155.86	115.03	103.15	170.01
84	E37a_E38a	KnownJunction	0	219.92	91.95	235.85	143.56	198.48	68.96	187.70
85	ER38a	ExonRegion	0	178.52	119.30	231.79	171.34	95.96	116.99	197.42
86	E38a_E39a	KnownJunction	0	71.08	67.18	123.77	109.85	49.01	65.63	112.63
87	E38a_E40a	NovelJunction	1	6.08	8.93	13.92	20.86	0.00	1.39	0.00
88	ER39a	ExonRegion	0	95.51	60.60	155.45	86.15	64.10	66.97	132.86
89	E39a_E40a	KnownJunction	0	84.37	50.31	140.21	86.29	63.60	53.52	96.58
90	ER40a	ExonRegion	0	170.08	82.81	216.73	111.67	89.89	68.64	138.93
91	E40a_E41a	KnownJunction	0	246.83	107.90	274.06	121.37	88.20	62.01	174.07
92	ER41a	ExonRegion	0	255.08	110.01	276.27	150.68	151.10	77.28	190.58
93	E41a_E42a	KnownJunction	0	234.73	112.91	230.43	154.39	130.64	85.97	209.47
94	ER42a	ExonRegion	0	136.73	107.65	181.89	174.25	119.48	119.22	190.83
95	E42a_E43a	KnownJunction	0	136.29	97.57	166.57	166.75	111.39	117.09	165.56
96	ER43a	ExonRegion	0	125.21	87.40	185.85	167.55	104.67	106.53	167.61
97	E43a_E44a	KnownJunction	0	137.48	81.73	158.85	179.37	100.90	82.17	158.71
98	ER44a	ExonRegion	0	133.55	83.65	196.11	182.26	102.93	86.22	186.93
99	E44a_E45a	KnownJunction	0	126.58	90.48	214.35	160.19	109.52	111.46	189.68
100	ER45a	ExonRegion	0	124.04	96.78	193.13	172.24	103.21	101.37	175.80
101	E45a_E46a	KnownJunction	0	133.85	87.72	162.18	156.48	110.70	70.35	147.84
102	E45a_E47a	NovelJunction	0	4.86	3.47	3.09	4.50	0.00	12.38	0.00
103	ER46a	ExonRegion	0	120.73	92.56	190.48	180.57	102.10	96.42	182.20
104	E46a_E47a	KnownJunction	0	88.87	70.46	174.66	146.62	64.76	82.95	154.94
105	ER47a	ExonRegion	0	149.94	100.74	211.04	162.14	93.99	97.82	173.44
106	E47a_E48a	KnownJunction	0	182.00	87.85	256.31	167.59	123.13	107.84	165.86
107	ER48a	ExonRegion	0	200.92	98.34	267.96	164.30	129.74	90.91	191.10
108	E48a_E49a	KnownJunction	0	205.10	105.87	287.23	182.08	120.84	76.78	193.98
109	ER49a	ExonRegion	0	294.53	133.51	334.62	201.66	171.93	113.63	226.09
110	E49a_E50a	KnownJunction	0	311.45	142.15	331.09	250.00	186.13	165.89	243.12
111	ER50a	ExonRegion	0	274.83	142.42	312.34	219.27	159.71	181.00	236.94
112	E50a_E51a	KnownJunction	0	219.04	101.38	233.23	198.06	187.56	165.78	240.14
113	ER51a	ExonRegion	0	169.56	95.76	217.43	168.04	131.73	146.89	193.41
114	E51a_E52a	KnownJunction	0	144.75	84.25	190.95	188.23	102.03	170.12	166.14
115	E51a_E53a	NovelJunction	0	6.59	15.68	8.82	8.89	0.00	9.67	9.56
116	ER52a	ExonRegion	0	185.04	117.36	260.37	195.57	144.08	192.30	234.17
117	E52a_E53a	KnownJunction	0	257.66	125.55	336.96	245.36	211.72	233.59	237.43
118	ER53a	ExonRegion	0	218.75	118.81	285.56	206.32	158.24	196.80	229.55
119	E53a_E54a	KnownJunction	0	276.59	100.44	312.58	195.22	153.00	179.53	227.20
120	ER54a	ExonRegion	0	278.49	109.45	322.23	187.30	158.33	177.67	221.25
121	E54a_E55a	KnownJunction	0	267.77	116.07	277.69	186.87	180.34	142.95	211.59
122	ER55a	ExonRegion	0	348.03	130.67	374.17	216.59	243.90	201.08	266.05
123	E55a_E56a	KnownJunction	0	387.56	120.66	360.91	226.81	224.26	160.42	267.12
124	ER56a	ExonRegion	0	256.77	146.38	240.96	261.44	172.12	215.46	178.78
125	E56a_E57a	KnownJunction	0	246.38	152.35	238.82	243.12	243.30	241.98	197.49
126	ER57a	ExonRegion	0	333.42	133.90	332.44	268.23	232.45	235.57	303.76
127	E57a_E58a	KnownJunction	1	213.53	58.82	237.87	189.42	211.63	169.27	272.17
128	E58_Aa	NovelBoundary	1	77.64	1.39	93.90	2.33	1.18	7.40	7.71
129	ER58a	ExonRegion	0	97.02	36.84	118.26	71.82	76.13	69.80	90.98
130	IG34_AR1	ActiveIntergenicRegion	0	7.82	4.30	4.67	10.20	3.92	10.77	9.02
131	IG34_SR1	SilentIntergenicRegion	0	10.31	7.09	7.06	10.99	4.63	14.17	11.10
132	IG34_AR2	ActiveIntergenicRegion	0	16.52	5.26	12.93	12.26	16.20	15.32	15.97
133	IG34_AR3	ActiveIntergenicRegion	0	9.76	6.27	6.36	9.18	5.40	15.40	14.85
134	IG34_AR6	ActiveIntergenicRegion	0	5.08	3.25	6.33	3.73	2.86	6.61	7.35