Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SLFN12	Gene	0	15.77	5.98	19.14	12.45	15.50	7.00	6.73
2	394562	Transcript	0	1.60	1.13	2.89	5.11	1.89	1.56	1.13
3	304905	Transcript	0	3.03	2.12	3.38	5.67	5.13	3.12	1.49
4	IG25	Intergenic	0	0.27	0.54	2.27	9.41	0.65	3.94	0.05
5	IG25_SR2	SilentIntergenicRegion	0	0.12	1.18	1.49	8.38	0.38	2.16	0.00
6	IG25_AR2	ActiveIntergenicRegion	0	0.88	0.00	3.41	10.60	0.77	4.92	0.26
7	IG25_SR1	SilentIntergenicRegion	0	0.03	0.00	3.39	12.06	0.90	5.44	0.00
8	ER1a	ExonRegion	0	3.24	1.96	7.24	12.89	1.21	5.61	3.86
9	E1_Da	NovelBoundary	0	0.00	1.31	1.55	20.07	0.00	4.26	0.00
10	E1a_E2b	KnownJunction	0	1.03	1.37	3.94	9.27	3.27	3.70	2.51
11	I1	Intron	0	0.00	1.02	0.00	8.97	0.00	0.52	0.00
12	I1_SR1	SilentIntronRegion	0	0.00	1.03	0.00	9.02	0.00	0.52	0.00
13	ER2a	ExonRegion	0	2.62	2.60	1.56	2.15	2.79	0.80	0.21
14	E2_Ab	KnownBoundary	0	4.49	1.63	4.31	1.65	5.26	1.31	0.86
15	ER2b	ExonRegion	0	4.06	2.48	4.83	9.79	9.94	7.25	3.33
16	E2a_E3a	KnownJunction	0	0.00	0.00	0.73	3.98	0.00	0.00	0.00
17	E2a_E4a	KnownJunction	0	3.44	1.63	5.20	9.18	7.47	5.44	2.78
18	E3_Aa	NovelBoundary	0	10.90	2.73	13.44	18.56	0.00	2.84	10.88
19	ER3a	ExonRegion	0	2.80	2.08	2.49	3.15	1.47	0.02	0.42
20	E3_Da	NovelBoundary	0	0.80	0.00	2.69	0.00	15.47	0.00	0.72
21	E3a_E4a	KnownJunction	0	2.50	1.37	0.73	1.06	1.11	0.00	0.00
22	ER4a	ExonRegion	0	16.15	6.49	22.30	13.86	16.39	6.19	8.40
23	E4a_E5a	KnownJunction	0	4.09	4.20	11.32	13.41	8.41	3.32	2.91
24	ER5a	ExonRegion	0	12.70	5.77	17.15	14.21	21.34	8.34	5.80
25	E5a_E6a	KnownJunction	0	15.30	9.93	12.82	9.62	20.40	5.55	7.42
26	ER6a	ExonRegion	0	26.83	8.63	28.48	15.11	24.91	11.23	8.94
27	ER6b	ExonRegion	0	0.00	0.00	2.20	0.31	4.25	0.00	0.00
28	IG24_AR8	ActiveIntergenicRegion	0	10.59	4.12	15.62	7.87	12.16	3.51	2.59
29	IG24_SR6	SilentIntergenicRegion	0	15.22	4.93	19.60	10.97	19.57	5.13	4.39
30	IG24_AR7	ActiveIntergenicRegion	0	15.95	5.84	16.24	14.81	24.17	5.90	5.84
31	IG24_AR6	ActiveIntergenicRegion	0	6.81	2.37	11.79	11.10	9.10	4.34	1.95
32	IG24_SR3	SilentIntergenicRegion	0	7.86	0.00	12.97	3.74	2.43	2.45	0.00
33	IG24_AR2	ActiveIntergenicRegion	0	7.30	0.61	9.93	3.74	4.52	2.04	0.00
34	IG24_AR1	ActiveIntergenicRegion	0	3.04	1.14	9.34	5.87	5.34	2.82	0.45