Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 RHOT1 Gene 0 96.43 27.88 108.41 29.27 195.06 15.42 76.14 2 378607 Transcript 0 0 0 0 0 0 0 0 3 333942 Transcript 0 52.27 10.01 58.46 14.71 163.01 11.95 24.48 4 358365 Transcript 0 6.79 2.92 7.23 1.68 11.25 0.00 10.68 5 354266 Transcript 0 25.14 7.75 27.33 6.69 62.38 4.37 28.82 6 394692 Transcript 0 14.39 0.00 18.60 0.00 37.92 0.00 7.77 7 ER1a ExonRegion 0 5.35 5.15 7.14 4.31 10.08 2.63 6.80 8 E1a_E2a KnownJunction 0 22.90 21.65 37.13 16.23 32.62 13.91 35.31 9 ER2a ExonRegion 0 30.22 26.42 52.01 25.32 49.43 13.94 43.07 10 E2a_E3a KnownJunction 0 38.27 28.35 65.84 27.36 70.84 15.06 47.81 11 ER3a ExonRegion 0 51.81 40.12 73.23 33.07 103.08 17.69 60.74 12 E3a_E4a KnownJunction 0 44.16 42.30 67.81 24.63 70.98 22.46 55.15 13 ER4a ExonRegion 0 61.61 46.69 91.55 44.72 88.24 21.12 75.86 14 E4a_E5a KnownJunction 0 50.10 31.16 79.58 48.36 110.40 12.11 61.84 15 ER5a ExonRegion 0 65.56 36.85 106.47 53.43 113.83 29.79 74.80 16 E5a_E6a KnownJunction 0 73.69 29.16 98.05 47.63 115.56 34.01 72.30 17 ER6a ExonRegion 0 64.52 28.88 104.36 55.74 115.15 27.48 83.81 18 E6a_E7a KnownJunction 0 40.84 25.09 86.35 47.22 120.52 20.10 60.97 19 I6_AR5 ActiveIntronRegion 0 17.83 3.40 12.87 3.12 1.86 9.81 5.73 20 I6_AR6 ActiveIntronRegion 0 16.75 2.31 10.30 1.87 4.62 9.81 4.32 21 ER7a ExonRegion 0 53.74 32.29 95.96 33.71 113.65 20.17 72.30 22 E7a_E8a KnownJunction 0 52.64 24.75 100.43 22.40 124.88 18.52 64.41 23 ER8a ExonRegion 0 54.52 26.14 100.33 18.73 133.82 19.41 69.61 24 E8a_E9a KnownJunction 1 49.00 25.09 111.08 18.37 146.29 24.55 64.29 25 ER9a ExonRegion 0 49.88 27.03 102.33 33.69 162.53 19.39 76.73 26 E9a_E10a KnownJunction 0 57.43 37.75 100.45 41.61 196.50 10.51 98.11 27 ER10a ExonRegion 1 62.21 33.33 112.89 42.56 160.67 10.45 114.50 28 ER10b ExonRegion 0 80.06 31.66 139.01 35.54 187.49 15.60 121.00 29 E10b_E11a KnownJunction 0 99.59 35.91 152.27 34.84 223.11 10.85 94.39 30 ER11a ExonRegion 0 143.96 39.14 201.59 45.03 285.36 12.03 141.64 31 E11a_E12a KnownJunction 0 155.60 35.05 211.75 54.51 277.16 16.83 124.35 32 ER12a ExonRegion 0 179.80 38.75 221.65 47.27 290.91 20.54 116.53 33 E12a_E13a KnownJunction 0 185.91 33.55 227.84 49.96 320.30 26.40 113.55 34 ER13a ExonRegion 0 130.49 35.47 156.42 37.51 247.52 20.54 93.95 35 E13a_E14a KnownJunction 0 101.98 23.75 121.37 35.44 190.81 9.17 65.57 36 ER14a ExonRegion 0 95.09 22.85 122.65 30.59 215.39 13.63 80.48 37 E14a_E15a KnownJunction 0 127.29 28.11 140.41 34.11 246.57 19.70 85.74 38 ER15a ExonRegion 0 211.22 42.09 210.73 41.33 333.71 17.61 95.92 39 E15a_E16a KnownJunction 0 245.93 52.46 235.52 45.16 307.06 21.15 120.38 40 ER16a ExonRegion 0 226.42 46.28 198.22 35.23 397.54 13.92 108.02 41 E16a_E17a KnownJunction 0 183.57 44.66 164.86 22.27 478.85 11.31 107.49 42 ER17a ExonRegion 0 213.19 42.46 202.48 34.11 443.64 18.25 143.70 43 E17a_E18a KnownJunction 0 141.83 48.71 135.53 43.02 320.55 23.56 125.18 44 ER18a ExonRegion 0 184.25 48.75 178.78 50.86 385.61 23.80 132.58 45 E18a_E19a KnownJunction 1 32.28 12.19 22.62 4.14 81.58 0.00 26.21 46 E18a_E20a KnownJunction 0 25.14 7.75 27.33 6.69 62.38 4.37 28.82 47 E18a_E21a KnownJunction 0 52.27 10.01 58.46 14.71 163.01 11.95 24.48 48 ER19a ExonRegion 0 34.77 8.45 28.87 2.70 71.76 2.92 29.58 49 E19a_E20a KnownJunction 0 6.79 2.92 7.23 1.68 11.25 0.00 10.68 50 E19a_E21a KnownJunction 0 14.39 0.00 18.60 0.00 37.92 0.00 7.77 51 ER20a ExonRegion 0 32.17 11.90 30.44 14.51 64.27 9.54 42.03 52 E20a_E21a KnownJunction 0 13.85 10.01 20.56 11.30 48.85 11.50 32.05 53 E21_Ab NovelBoundary 0 81.36 19.31 89.04 21.67 204.36 15.36 51.44 54 ER21a ExonRegion 0 82.13 22.33 100.77 23.60 242.68 22.35 63.02 55 ER21b ExonRegion 0 105.89 24.87 106.53 27.74 209.88 22.10 72.85 56 E21_Da KnownBoundary 0 113.42 23.83 104.60 32.83 237.26 30.82 80.63 57 ER21c ExonRegion 0 87.74 23.16 85.50 24.84 188.41 14.38 64.56