Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	KSR1	Gene	0	19.52	26.19	23.09	19.39	25.08	25.07	2.91
2	398988	Transcript	0	25.12	24.72	12.92	21.13	22.91	28.81	0.00
3	319524	Transcript	0	0	0	0	0	0	0	0
4	398982	Transcript	0	0	0	0	0	0	0	0
5	268763	Transcript	0	0	0	0	0	0	0	0
6	398985	Transcript	0	2.57	1.36	3.29	0.78	1.70	0.44	0.27
7	IG49_AR1	ActiveIntergenicRegion	0	25.35	8.79	35.38	19.75	7.35	24.61	4.87
8	IG49_SR1	SilentIntergenicRegion	0	22.66	11.83	25.60	24.38	13.98	25.15	2.94
9	IG49_AR3	ActiveIntergenicRegion	0	29.31	22.12	35.07	42.65	17.02	43.90	6.79
10	IG49_SR2	SilentIntergenicRegion	0	4.19	3.35	6.97	8.34	1.19	4.78	1.74
11	IG49_AR4	ActiveIntergenicRegion	0	7.68	1.71	9.37	7.78	1.20	10.32	0.41
12	ER1a	ExonRegion	0	7.43	25.69	10.51	16.35	11.15	21.38	1.71
13	E1a_E3a	NovelJunction	0	0.68	10.56	0.76	1.38	0.00	2.76	0.00
14	E1a_E4a	KnownJunction	0	17.47	44.53	22.65	28.77	16.97	38.65	0.67
15	I1_AR2	ActiveIntronRegion	0	9.52	1.31	5.87	0.00	3.28	0.70	1.47
16	I1_AR4	ActiveIntronRegion	0	13.21	0.00	9.48	4.83	3.75	2.61	0.00
17	ER2a	ExonRegion	0	0.05	0.03	0.03	0.05	1.72	0.07	0.00
18	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E3_Aa	NovelBoundary	0	13.77	1.16	7.76	2.79	2.93	1.10	0.00
20	ER3a	ExonRegion	0	8.84	11.76	5.45	4.59	1.68	5.40	0.26
21	E3a_E4a	KnownJunction	0	2.07	8.51	0.78	4.74	0.00	1.53	0.00
22	ER4a	ExonRegion	0	21.69	52.20	27.98	31.75	22.56	49.89	3.49
23	E4a_E6a	KnownJunction	0	17.32	57.90	22.81	35.44	31.05	46.10	5.99
24	E4a_E7a	NovelJunction	0	0.00	4.39	3.45	5.63	0.00	8.55	1.61
25	ER5a	ExonRegion	0	1.66	1.32	2.45	0.68	0.57	0.00	0.00
26	E5a_E6a	KnownJunction	0	0.00	0.00	0.53	0.00	0.00	0.00	0.00
27	ER6a	ExonRegion	0	19.33	56.79	29.62	27.48	29.21	44.48	3.44
28	E6_Da	KnownBoundary	0	0.78	0.00	0.52	0.00	3.20	0.00	0.00
29	E6a_E7a	KnownJunction	0	17.17	50.31	30.72	23.89	24.44	37.55	2.62
30	ER6b	ExonRegion	0	6.06	2.76	6.90	1.65	4.53	1.33	0.80
31	E6_Db	NovelBoundary	0	0.70	3.36	1.06	8.86	1.91	11.63	0.00
32	ER7a	ExonRegion	0	18.36	41.67	27.32	28.65	28.11	39.27	4.04
33	E7a_E8a	KnownJunction	0	11.62	17.34	8.79	16.69	15.03	11.47	1.73
34	E8a_E9a	KnownJunction	0	5.87	11.14	12.56	9.78	15.05	17.42	2.69
35	ER8a	ExonRegion	0	18.44	37.66	28.31	30.43	35.47	33.35	2.70
36	I8	Intron	0	11.90	9.41	6.73	2.07	4.47	3.30	1.55
37	I8_SR1	SilentIntronRegion	0	7.79	9.86	4.53	2.36	2.87	3.12	0.97
38	I8_AR1	ActiveIntronRegion	0	11.06	6.18	7.08	0.78	4.81	2.26	1.69
39	I8_SR2	SilentIntronRegion	1	16.99	10.10	10.56	1.75	5.02	3.43	1.71
40	I8_AR3	ActiveIntronRegion	1	13.53	10.51	5.53	2.65	4.90	3.93	1.60
41	I8_SR3	SilentIntronRegion	0	11.19	8.79	7.17	1.79	4.31	2.66	1.52
42	I8_AR4	ActiveIntronRegion	0	8.58	9.88	7.43	2.56	4.65	3.68	1.90
43	E9_Aa	NovelBoundary	1	23.33	4.28	4.86	3.01	8.41	2.60	0.60
44	ER9a	ExonRegion	0	25.74	52.10	37.63	39.04	52.60	46.97	3.87
45	E9a_E10a	KnownJunction	0	45.71	64.31	57.14	56.76	42.44	50.20	6.31
46	ER10a	ExonRegion	0	56.19	61.05	61.87	62.53	58.47	59.18	8.41
47	E10a_E11a	KnownJunction	0	61.87	52.96	67.43	61.42	92.53	78.36	7.22
48	E11_Aa	NovelBoundary	0	10.33	1.23	4.66	0.00	1.11	0.00	0.00
49	ER11a	ExonRegion	0	67.75	51.81	79.64	59.61	101.34	77.51	9.13
50	E11_Da	NovelBoundary	1	22.35	7.62	4.31	0.00	0.00	0.00	1.49
51	E11a_E12a	KnownJunction	0	89.62	57.98	87.39	59.95	83.75	86.86	13.01
52	E12_Aa	NovelBoundary	1	24.30	5.23	3.26	1.68	0.95	2.89	0.89
53	ER12a	ExonRegion	0	97.61	64.34	78.91	71.47	69.34	81.06	10.47
54	E12a_E13a	KnownJunction	0	59.27	62.16	60.31	59.82	51.34	62.42	9.82
55	ER13a	ExonRegion	0	60.14	44.86	42.73	35.34	64.48	44.53	6.60
56	E13_Da	NovelBoundary	0	4.97	8.72	5.53	0.00	6.02	0.00	0.00
57	E13a_E14a	KnownJunction	1	12.08	26.72	11.58	13.22	39.88	6.22	0.89
58	E13a_E16a	NovelJunction	0	1.84	2.57	6.09	3.90	11.13	9.35	0.76
59	I13	Intron	0	10.17	9.57	10.10	3.40	4.26	3.28	0.71
60	I13_SR1	SilentIntronRegion	0	10.20	9.69	10.29	3.31	4.36	3.27	0.73
61	I13_AR1	ActiveIntronRegion	0	9.64	7.03	5.92	5.51	2.16	3.73	0.23
62	E14_Aa	NovelBoundary	0	9.51	10.43	4.76	4.50	3.25	10.77	0.89
63	ER14a	ExonRegion	1	21.13	30.89	14.60	14.82	32.10	11.73	0.61
64	E14a_E15a	KnownJunction	0	2.67	1.63	1.38	0.00	0.99	0.00	0.00
65	E14a_E16a	KnownJunction	1	25.12	24.72	12.92	21.13	22.91	28.81	0.00
66	ER15a	ExonRegion	0	3.11	3.09	2.49	1.25	1.95	0.00	0.00
67	E15a_E16a	KnownJunction	0	1.70	6.02	2.18	0.00	3.09	0.00	0.00
68	ER16a	ExonRegion	0	20.64	30.06	13.46	16.64	24.59	24.36	0.43
69	E16a_E17a	KnownJunction	0	14.32	24.88	15.69	18.80	20.38	26.56	1.78
70	ER17a	ExonRegion	0	13.16	25.02	11.31	26.34	16.46	32.68	3.08
71	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
72	ER18a	ExonRegion	0	21.08	31.48	22.87	26.23	26.13	30.22	4.34
73	E18a_E19a	KnownJunction	0	38.42	42.01	39.19	32.89	44.52	49.74	1.75
74	ER19a	ExonRegion	0	46.88	54.33	62.81	54.52	68.35	78.73	6.91
75	E19a_E20a	KnownJunction	0	59.68	70.01	83.53	60.39	89.47	99.64	12.10
76	ER20a	ExonRegion	0	51.46	87.79	74.32	52.33	80.89	87.59	8.23
77	E20a_E21a	KnownJunction	0	48.28	64.86	67.73	55.43	69.48	95.30	12.47
78	ER21a	ExonRegion	0	50.30	88.01	77.50	65.34	90.45	77.71	9.73
79	E21a_E22a	KnownJunction	0	46.23	83.10	80.62	70.71	94.98	83.80	8.79
80	ER22a	ExonRegion	0	45.37	78.04	68.04	60.62	86.84	72.80	7.11
81	E22a_E23a	KnownJunction	0	48.82	58.72	68.04	40.96	85.39	55.34	5.95
82	ER23a	ExonRegion	0	49.00	61.63	64.37	46.77	73.03	72.87	6.19
83	E23a_E25a	KnownJunction	0	19.81	44.98	26.77	37.93	30.80	38.94	3.17
84	ER24a	ExonRegion	0	0.19	0.00	1.86	0.00	0.81	2.15	0.00
85	I24	Intron	0	9.14	8.15	8.77	2.90	17.67	2.30	0.61
86	I24_AR2	ActiveIntronRegion	1	22.52	19.91	19.76	7.61	49.96	5.80	1.35
87	E25_Aa	NovelBoundary	1	17.26	52.41	21.83	23.00	89.86	13.43	1.42
88	ER25a	ExonRegion	0	16.42	30.34	23.19	19.19	60.66	25.58	2.66
89	IG50	Intergenic	0	37.90	37.27	37.91	28.13	61.66	43.48	5.13
90	IG50_AR1	ActiveIntergenicRegion	0	54.38	53.52	53.66	40.40	88.79	62.66	7.42