Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 ULK2 Gene 0 19.06 9.55 22.36 9.40 26.13 12.15 67.60 2 361658 Transcript 0 4.19 0.26 2.48 0.67 5.47 4.53 12.43 3 395545 Transcript 0 13.05 7.16 20.99 5.44 23.09 5.15 52.15 4 395544 Transcript 0 0.77 0.00 0.34 0.00 0.00 0.61 2.36 5 IG27_AR6 ActiveIntergenicRegion 0 19.33 15.85 26.91 10.81 33.93 12.67 18.53 6 IG27_SR3 SilentIntergenicRegion 0 6.69 4.26 9.93 2.99 6.05 3.43 8.56 7 IG27_SR2 SilentIntergenicRegion 0 6.15 9.12 11.99 4.78 5.35 5.23 9.16 8 IG27_AR3 ActiveIntergenicRegion 0 1.40 10.82 4.13 1.25 4.34 2.12 2.76 9 IG27_AR2 ActiveIntergenicRegion 0 1.54 10.93 5.26 2.40 6.35 2.45 3.84 10 IG27_AR1 ActiveIntergenicRegion 0 5.21 13.67 12.19 8.39 6.37 7.10 15.41 11 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.55 0.61 12 ER1b ExonRegion 0 0.91 2.34 1.13 0.85 1.13 2.67 6.67 13 E1a_E2a KnownJunction 0 4.37 0.00 7.24 2.79 2.35 6.14 25.51 14 ER2a ExonRegion 0 8.67 4.19 18.37 2.78 15.28 9.45 51.79 15 E2a_E3a KnownJunction 1 8.38 5.86 24.47 3.36 19.27 11.63 57.80 16 ER3a ExonRegion 0 11.76 9.46 28.35 6.56 20.44 9.81 72.71 17 E3a_E4a KnownJunction 0 7.49 6.49 15.35 6.29 21.69 4.88 40.57 18 ER4a ExonRegion 0 12.95 12.48 25.47 8.50 30.11 12.41 74.57 19 E4a_E5a KnownJunction 0 9.41 9.43 17.91 5.61 33.17 11.58 48.97 20 ER5a ExonRegion 0 13.62 12.97 31.75 8.80 36.57 14.31 77.41 21 E5a_E6a KnownJunction 1 10.31 12.32 29.69 7.31 32.07 9.84 62.03 22 ER6a ExonRegion 0 24.14 14.70 45.23 12.70 43.98 16.51 119.78 23 E6a_E7a KnownJunction 0 13.92 6.15 23.55 6.80 25.77 1.55 60.08 24 E6b_E7b KnownJunction 1 16.86 15.16 25.05 3.09 30.45 15.41 57.31 25 ER6b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 ER7a ExonRegion 0 38.27 21.87 60.42 14.96 64.14 18.14 146.93 27 ER7b ExonRegion 0 42.12 19.92 53.91 12.56 78.56 23.45 140.28 28 E7a_E8a KnownJunction 0 54.14 9.54 49.22 15.63 68.93 16.03 115.05 29 ER8a ExonRegion 0 64.28 19.24 64.82 21.79 75.52 21.23 146.25 30 E8a_E9a KnownJunction 0 67.68 16.55 64.67 23.84 76.42 18.84 139.13 31 ER9a ExonRegion 0 71.32 22.28 63.47 23.40 92.23 17.97 144.97 32 E9a_E10a KnownJunction 0 65.22 20.54 57.15 19.02 105.90 14.10 128.45 33 ER10a ExonRegion 0 46.80 17.23 55.18 12.50 62.90 17.13 110.66 34 E10a_E11a KnownJunction 0 31.26 11.43 45.65 7.18 40.90 8.60 73.36 35 ER11a ExonRegion 0 30.31 12.78 37.41 7.22 44.86 8.84 91.39 36 E11a_E12a KnownJunction 0 29.54 12.45 23.90 7.29 47.10 9.62 78.74 37 ER12a ExonRegion 0 26.75 10.13 27.95 8.49 35.52 10.41 96.43 38 E12a_E13a KnownJunction 1 9.85 12.30 29.39 9.24 26.81 11.82 91.68 39 ER13a ExonRegion 0 20.65 19.09 31.99 15.15 40.56 12.45 131.41 40 E13a_E14a KnownJunction 0 14.84 20.41 23.50 20.05 49.15 13.64 105.94 41 ER14a ExonRegion 0 28.46 18.92 29.82 18.28 47.94 14.25 128.10 42 E14a_E15a KnownJunction 0 36.67 17.21 30.21 16.28 51.32 14.50 151.18 43 ER15a ExonRegion 0 37.80 22.11 35.25 15.40 52.62 19.96 159.46 44 E15a_E16a KnownJunction 0 39.64 18.86 43.24 17.01 48.62 14.90 142.08 45 ER16a ExonRegion 0 32.61 19.10 33.99 12.78 43.25 15.12 120.47 46 E16a_E17a KnownJunction 0 20.11 8.43 30.65 11.27 30.68 12.84 79.05 47 ER17a ExonRegion 0 23.48 9.19 30.79 14.82 27.15 15.47 87.45 48 E17a_E18a KnownJunction 0 24.65 9.85 25.55 18.15 24.83 18.55 99.07 49 ER18a ExonRegion 0 18.77 13.22 25.38 13.77 29.21 15.00 90.53 50 E18a_E19a KnownJunction 0 24.05 11.77 28.21 12.79 40.04 11.18 98.28 51 ER19a ExonRegion 0 19.85 11.77 27.71 13.84 30.85 16.50 103.23 52 E19a_E20a KnownJunction 0 21.56 9.14 31.30 16.36 44.86 12.81 98.39 53 ER20a ExonRegion 0 20.35 7.22 26.87 11.91 33.87 18.02 106.95 54 E20a_E21a KnownJunction 1 12.48 2.65 17.53 7.80 24.46 18.47 73.33 55 ER21a ExonRegion 0 12.79 11.13 18.96 7.10 22.71 12.11 70.94 56 E21a_E22a KnownJunction 0 14.55 7.17 14.00 4.61 24.18 12.22 42.78 57 ER22a ExonRegion 0 14.16 12.03 12.14 7.67 15.73 10.72 49.15 58 E22a_E23a KnownJunction 1 17.17 14.27 10.00 2.82 16.09 14.53 52.04 59 ER23a ExonRegion 0 11.67 12.20 12.23 8.46 22.99 14.62 66.52 60 E23a_E24a KnownJunction 1 4.74 7.67 8.95 10.94 12.31 7.61 41.40 61 E23b_E24b KnownJunction 0 0.00 0.00 0.00 0.00 1.84 0.00 0.59 62 ER23b ExonRegion 0 0.00 0.61 0.00 0.00 0.61 0.92 1.01 63 ER24a ExonRegion 1 4.46 14.58 9.35 9.73 17.17 8.58 53.02 64 ER24b ExonRegion 1 12.23 17.18 14.97 5.28 28.79 19.58 75.03 65 E24a_E25a KnownJunction 1 22.16 25.43 28.40 2.36 33.66 10.91 96.57 66 ER25a ExonRegion 0 28.06 20.81 33.63 15.42 41.13 22.94 114.96 67 E25a_E26a KnownJunction 0 33.20 11.53 34.04 13.25 40.76 16.37 109.32 68 ER26a ExonRegion 0 29.35 14.67 29.57 22.71 44.34 19.92 117.82 69 E26a_E27a KnownJunction 1 35.65 12.66 28.68 25.11 34.03 8.50 89.39 70 ER27a ExonRegion 0 31.17 8.68 23.74 20.98 37.82 11.85 93.68 71 E27_Da KnownBoundary 1 12.75 6.28 18.18 14.76 29.39 8.82 77.48 72 E27a_E28a KnownJunction 0 3.02 0.00 3.39 0.00 8.67 4.61 19.09 73 ER27b ExonRegion 0 16.97 5.62 19.55 7.85 18.78 10.38 43.40 74 ER27c ExonRegion 0 0.77 0.00 0.34 0.00 0.00 0.61 2.36 75 ER28a ExonRegion 1 9.56 0.78 4.05 2.00 7.75 8.44 17.59