Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MYH10	Gene	0	33.17	28.12	48.14	36.48	723.02	46.65	89.04
2	360416	Transcript	0	5.89	2.30	3.27	1.00	46.00	1.03	3.99
3	379980	Transcript	0	0.00	0.00	0.02	0.00	0.45	0.00	0.00
4	269243	Transcript	0	0	0	0	0	0	0	0
5	396239	Transcript	0	0	0	0	0	0	0	0
6	IG12_AR1	ActiveIntergenicRegion	0	1.92	2.43	1.35	1.25	10.53	0.00	4.05
7	ER1a	ExonRegion	0	2.99	1.21	1.19	0.99	70.03	1.56	5.98
8	E1_Ab	KnownBoundary	0	10.20	1.58	5.86	3.87	239.15	2.84	20.01
9	ER1b	ExonRegion	1	14.95	4.69	22.25	23.75	397.71	12.80	27.91
10	E1a_E2a	KnownJunction	1	16.97	8.25	23.05	28.58	260.08	21.55	24.48
11	ER2a	ExonRegion	0	27.25	23.77	50.55	34.64	341.48	37.71	59.10
12	E2a_E3a	KnownJunction	0	35.12	29.08	67.25	34.19	484.13	37.92	70.54
13	ER3a	ExonRegion	0	27.21	21.61	62.77	32.22	506.36	31.81	82.60
14	E3_Da	NovelBoundary	1	3.69	3.26	12.89	1.63	0.00	0.00	0.00
15	E3a_E4a	KnownJunction	1	15.71	7.83	38.73	11.00	421.89	28.97	47.51
16	E4a_E5a	KnownJunction	0	19.11	10.22	35.51	10.43	440.26	10.93	48.27
17	ER4a	ExonRegion	0	20.91	11.76	51.12	13.85	499.39	23.16	70.54
18	ER5a	ExonRegion	0	24.27	17.07	64.51	21.80	591.44	23.01	88.16
19	E5a_E6a	KnownJunction	0	4.74	4.89	3.25	1.27	101.52	3.32	5.02
20	E5a_E7a	KnownJunction	1	14.00	8.70	46.86	18.10	503.80	21.73	73.08
21	E6a_E7a	KnownJunction	0	6.34	3.07	4.86	1.65	64.73	1.53	1.75
22	ER6a	ExonRegion	0	6.89	6.07	5.24	0.67	90.70	3.68	5.01
23	E6b_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	ER6b	ExonRegion	0	0.00	0.00	0.04	0.00	0.90	0.00	0.00
25	ER7a	ExonRegion	0	34.75	20.84	73.16	32.03	674.48	22.28	87.06
26	E7a_E8a	KnownJunction	1	42.31	27.27	85.85	44.78	709.89	15.89	95.17
27	ER8a	ExonRegion	0	30.92	25.02	74.82	32.99	633.90	20.38	88.18
28	E8a_E9a	KnownJunction	0	24.77	13.19	63.32	23.16	604.79	21.57	81.46
29	ER9a	ExonRegion	0	32.83	16.11	66.49	33.15	642.18	18.86	88.09
30	E9a_E10a	KnownJunction	0	24.77	13.74	59.23	29.23	581.07	12.92	80.76
31	ER10a	ExonRegion	0	23.22	17.12	54.69	22.63	543.55	22.80	84.41
32	E10a_E11a	KnownJunction	0	25.05	20.26	45.40	19.97	527.91	25.11	83.85
33	ER11a	ExonRegion	0	25.49	17.08	52.21	24.60	546.99	29.46	88.02
34	E11a_E12a	KnownJunction	0	18.34	23.88	47.29	22.32	520.35	25.89	87.18
35	ER12a	ExonRegion	0	24.74	21.66	42.74	32.32	526.80	32.40	91.25
36	E12a_E13a	KnownJunction	1	34.20	15.92	48.70	42.78	634.92	33.15	102.01
37	E13_Aa	NovelBoundary	1	12.75	2.52	24.54	0.00	2.14	0.00	1.62
38	ER13a	ExonRegion	0	22.25	16.87	50.24	30.69	563.32	41.87	94.86
39	E13a_E14a	KnownJunction	1	23.83	10.75	52.55	34.70	482.63	35.78	103.77
40	I13_AR3	ActiveIntronRegion	0	11.10	0.00	9.04	6.25	17.32	2.19	1.79
41	ER14a	ExonRegion	0	24.31	16.46	50.34	34.62	645.49	32.39	92.38
42	E14a_E15a	KnownJunction	1	23.90	8.35	57.22	28.31	856.90	28.03	98.96
43	ER15a	ExonRegion	0	42.54	18.14	61.93	34.00	740.44	32.81	101.43
44	E15a_E16a	KnownJunction	0	39.72	25.35	68.68	41.12	921.03	39.64	125.84
45	ER16a	ExonRegion	0	38.10	24.79	59.73	21.94	810.63	40.97	91.22
46	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	E16a_E18a	KnownJunction	0	32.18	16.42	49.00	19.51	658.64	31.89	75.40
48	ER17a	ExonRegion	0	0.00	0.00	0.06	0.00	2.25	0.08	0.00
49	E17a_E18a	KnownJunction	0	0.00	0.00	0.50	0.00	0.00	0.00	0.00
50	ER18a	ExonRegion	0	31.04	18.03	56.23	18.99	798.53	37.99	80.07
51	E18a_E19a	KnownJunction	0	39.29	20.33	78.98	23.35	778.17	35.27	72.16
52	ER19a	ExonRegion	0	51.71	20.42	69.37	18.58	834.30	35.18	85.99
53	E19a_E20a	KnownJunction	1	59.38	16.81	78.99	12.33	937.24	34.06	84.50
54	I19_AR1	ActiveIntronRegion	0	10.14	6.52	6.23	10.52	2.02	10.82	1.71
55	I19_SR2	SilentIntronRegion	0	10.46	4.01	3.60	5.97	2.46	10.39	0.61
56	E20_Aa	NovelBoundary	1	23.78	16.63	11.45	10.92	2.10	6.91	2.22
57	ER20a	ExonRegion	0	54.59	21.61	79.88	25.97	889.53	30.79	89.85
58	E20_Da	NovelBoundary	1	15.19	16.00	8.94	15.96	2.21	16.96	0.79
59	E20a_E21a	KnownJunction	0	49.25	24.64	65.10	34.81	945.81	28.49	88.98
60	E21_Aa	NovelBoundary	1	19.98	13.82	6.21	13.90	0.00	11.79	1.61
61	ER21a	ExonRegion	0	43.36	28.42	56.89	38.22	756.54	35.01	84.35
62	E21_Da	NovelBoundary	1	12.20	14.45	7.93	9.75	3.30	16.78	2.46
63	E21a_E22a	KnownJunction	0	22.15	18.02	43.76	29.39	588.10	18.81	79.87
64	I21	Intron	0	11.66	14.49	5.93	14.62	1.98	16.19	2.35
65	I21_SR1	SilentIntronRegion	0	11.68	14.51	5.94	14.63	1.99	16.21	2.35
66	ER22a	ExonRegion	0	19.80	17.82	31.31	34.26	458.98	31.80	67.58
67	E22_Da	NovelBoundary	1	30.23	25.64	10.79	39.17	4.31	32.70	4.94
68	E22a_E23a	KnownJunction	0	19.08	18.68	21.01	26.03	106.14	24.47	39.04
69	ER23a	ExonRegion	0	20.77	21.52	32.06	33.25	535.25	31.71	66.12
70	E23a_E24a	KnownJunction	0	26.74	21.02	50.90	40.15	608.48	37.44	89.10
71	E24_Aa	NovelBoundary	1	14.90	6.17	19.62	3.60	4.63	0.00	0.00
72	ER24a	ExonRegion	0	31.59	22.65	57.73	37.96	679.14	39.53	108.43
73	E24_Da	NovelBoundary	0	4.87	8.43	5.19	0.00	2.12	2.04	0.86
74	E24a_E25a	KnownJunction	1	29.77	9.27	48.97	37.01	756.29	32.91	99.56
75	ER25a	ExonRegion	0	41.16	16.43	55.39	34.89	978.98	31.06	97.01
76	E25a_E26a	KnownJunction	0	67.34	21.36	74.11	36.79	1269.29	44.57	116.46
77	E26_Aa	NovelBoundary	0	4.47	8.09	3.82	8.45	3.04	16.03	2.67
78	ER26a	ExonRegion	0	88.61	29.05	84.88	55.97	1324.80	78.00	137.49
79	E26a_E27a	KnownJunction	0	77.52	24.38	77.28	52.29	1058.06	69.49	125.11
80	I26	Intron	0	4.52	7.65	1.87	4.27	1.82	4.86	1.54
81	I26_SR1	SilentIntronRegion	0	4.59	7.71	1.94	4.46	1.87	4.91	1.59
82	E27_Aa	NovelBoundary	1	13.10	16.39	2.90	14.76	7.19	7.50	3.78
83	ER27a	ExonRegion	0	49.68	23.11	48.84	42.30	844.28	58.17	76.75
84	E27_Da	NovelBoundary	1	13.39	8.77	2.04	21.08	2.72	15.46	1.38
85	E27a_E28a	KnownJunction	1	22.30	7.51	43.46	26.52	926.45	38.27	77.43
86	I27	Intron	0	6.85	7.91	3.36	6.49	2.87	5.07	1.09
87	I27_AR1	ActiveIntronRegion	0	11.18	6.12	4.77	6.56	4.81	6.47	0.65
88	I27_AR2	ActiveIntronRegion	0	5.78	9.43	3.21	7.12	2.47	3.42	1.58
89	E28_Aa	NovelBoundary	0	8.46	8.85	4.64	2.93	0.95	8.47	2.18
90	ER28a	ExonRegion	0	36.46	23.69	46.85	47.01	913.09	56.41	102.40
91	E28_Da	NovelBoundary	0	1.70	5.20	0.59	10.73	0.00	4.58	0.87
92	E28a_E29a	KnownJunction	1	28.06	13.08	43.64	45.38	881.29	30.31	86.17
93	I28	Intron	0	5.93	12.73	1.85	7.67	1.41	6.77	1.38
94	I28_SR1	SilentIntronRegion	0	5.94	12.74	1.85	7.67	1.41	6.78	1.38
95	ER29a	ExonRegion	0	29.03	20.27	41.64	34.13	877.52	36.64	91.20
96	E29_Da	NovelBoundary	0	4.41	14.55	1.64	7.59	1.98	3.27	0.66
97	E29a_E30a	KnownJunction	1	11.18	5.86	29.14	20.51	605.44	25.16	64.41
98	I29	Intron	0	6.92	9.37	1.78	7.83	1.60	5.14	1.36
99	I29_SR1	SilentIntronRegion	0	6.93	9.39	1.78	7.84	1.60	5.15	1.36
100	E30_Aa	NovelBoundary	0	5.01	6.94	1.21	13.79	4.50	12.33	2.26
101	ER30a	ExonRegion	0	18.39	20.05	32.94	28.48	677.83	44.41	86.54
102	E30_Da	NovelBoundary	0	4.34	9.43	0.85	1.68	6.43	4.69	0.69
103	E30a_E31a	KnownJunction	1	13.35	18.55	28.02	24.79	804.84	46.12	90.72
104	E31_Aa	NovelBoundary	1	17.81	26.53	8.74	24.41	0.00	26.67	2.52
105	ER31a	ExonRegion	0	22.86	25.42	37.90	33.98	769.18	38.48	92.81
106	E31_Da	NovelBoundary	1	17.89	16.97	6.94	12.68	0.99	6.65	3.05
107	E31a_E32a	KnownJunction	0	22.33	25.01	34.43	37.95	764.06	34.57	81.20
108	I31	Intron	1	12.90	16.52	4.64	13.42	2.78	12.23	3.01
109	I31_SR1	SilentIntronRegion	1	13.63	16.47	4.73	13.21	2.92	12.11	3.08
110	I31_AR1	ActiveIntronRegion	0	2.62	17.63	3.43	16.90	0.72	14.28	2.01
111	E32_Aa	NovelBoundary	1	17.81	24.20	18.98	15.90	1.80	15.81	2.51
112	ER32a	ExonRegion	0	23.47	34.89	32.63	40.60	594.51	43.01	77.50
113	E32_Da	NovelBoundary	0	17.37	32.34	8.68	25.71	0.00	30.02	7.84
114	E32a_E33a	KnownJunction	0	14.60	18.15	34.96	27.44	597.18	32.86	74.27
115	I32	Intron	1	28.39	16.73	8.84	25.66	2.48	22.94	5.70
116	I32_AR1	ActiveIntronRegion	1	37.99	23.50	11.65	34.69	2.93	32.04	8.07
117	I32_SR1	SilentIntronRegion	1	33.18	11.98	11.32	25.74	4.40	18.48	3.25
118	E33_Aa	NovelBoundary	1	19.53	30.95	11.27	24.84	1.13	11.20	2.32
119	ER33a	ExonRegion	0	20.91	29.39	25.27	34.92	362.04	36.35	59.08
120	E33_Da	NovelBoundary	1	20.13	9.43	7.11	19.37	0.00	5.84	2.78
121	E33a_E34a	KnownJunction	0	14.67	13.95	17.62	21.94	420.83	21.87	61.48
122	I33	Intron	0	9.01	9.61	4.81	7.61	0.97	5.92	2.45
123	I33_AR1	ActiveIntronRegion	0	14.13	10.85	7.25	6.19	1.31	6.82	3.04
124	I33_AR2	ActiveIntronRegion	0	12.06	7.82	5.68	4.93	0.46	5.70	4.66
125	I33_SR1	SilentIntronRegion	0	5.55	9.82	3.46	10.03	0.98	6.00	1.71
126	E34_Aa	NovelBoundary	1	17.54	13.32	5.42	20.64	1.18	16.64	3.97
127	ER34a	ExonRegion	0	19.43	23.16	27.60	36.24	394.70	41.38	57.72
128	E34_Da	NovelBoundary	0	10.15	16.60	3.15	10.76	0.92	9.67	5.53
129	E34a_E35a	KnownJunction	0	16.79	15.76	27.72	29.77	447.73	42.77	59.25
130	I34	Intron	1	21.62	28.55	9.77	28.24	4.56	20.01	7.06
131	I34_SR1	SilentIntronRegion	0	21.67	28.61	9.79	28.30	4.57	20.05	7.07
132	E35_Aa	NovelBoundary	0	9.96	20.52	3.15	15.63	3.46	18.25	4.18
133	ER35a	ExonRegion	0	21.93	33.83	32.88	45.20	412.96	51.75	59.88
134	E35_Da	NovelBoundary	1	14.82	27.80	4.38	22.81	1.87	24.04	6.32
135	E35a_E36a	KnownJunction	0	15.77	14.97	25.54	26.52	430.03	26.67	53.71
136	I35	Intron	1	13.82	14.24	4.95	6.63	2.35	5.89	5.46
137	I35_AR1	ActiveIntronRegion	0	6.36	10.31	3.92	15.33	0.90	10.05	4.00
138	I35_SR1	SilentIntronRegion	1	14.21	14.45	5.00	6.20	2.43	5.69	5.54
139	E36_Aa	NovelBoundary	0	6.99	16.68	2.95	5.77	0.00	8.74	2.97
140	ER36a	ExonRegion	0	26.83	23.95	46.27	33.20	731.18	36.99	68.77
141	E36_Da	NovelBoundary	0	5.34	21.54	3.19	12.46	6.34	9.81	2.34
142	E36a_E37a	KnownJunction	0	28.86	14.97	55.41	27.25	785.59	45.48	69.48
143	I36	Intron	1	12.02	10.97	3.53	6.36	3.31	6.59	4.42
144	I36_SR1	SilentIntronRegion	1	12.29	11.23	3.62	6.52	3.32	6.75	4.53
145	E37_Aa	NovelBoundary	1	44.45	13.00	12.59	18.80	9.20	6.27	32.10
146	ER37a	ExonRegion	0	51.00	38.12	78.80	47.68	912.11	59.96	109.20
147	E37_Da	NovelBoundary	1	30.78	20.31	10.71	6.12	8.09	0.00	32.59
148	E37a_E38a	KnownJunction	0	37.90	25.27	67.25	49.82	1058.61	55.23	96.54
149	I37	Intron	1	25.54	28.75	11.53	14.88	13.53	9.18	32.54
150	I37_AR2	ActiveIntronRegion	1	36.29	25.18	15.56	14.83	13.66	8.16	34.94
151	I37_SR1	SilentIntronRegion	1	47.80	31.49	20.76	23.23	17.94	16.68	44.02
152	I37_AR3	ActiveIntronRegion	1	25.78	25.05	9.60	13.66	14.82	6.80	32.24
153	I37_SR2	SilentIntronRegion	1	18.28	28.22	8.08	10.23	10.96	7.65	26.39
154	I37_AR4	ActiveIntronRegion	1	17.57	33.86	9.84	15.34	13.00	9.36	32.44
155	E38_Aa	NovelBoundary	1	9.90	33.73	3.49	14.09	12.73	9.19	19.89
156	ER38a	ExonRegion	0	25.16	27.93	45.42	39.27	708.91	44.73	82.31
157	E38_Da	NovelBoundary	1	18.83	35.20	3.68	5.69	2.14	7.29	16.97
158	E38a_E39a	KnownJunction	0	21.10	24.33	35.41	26.98	754.10	27.17	68.30
159	I38	Intron	0	10.33	9.24	3.20	2.38	1.55	3.90	7.67
160	I38_AR1	ActiveIntronRegion	1	10.62	14.01	3.22	4.12	0.89	4.73	11.79
161	E39_Aa	NovelBoundary	0	16.16	34.13	12.03	23.84	1.04	16.08	27.36
162	ER39a	ExonRegion	0	28.80	38.19	35.26	32.71	762.74	43.73	97.78
163	E39_Da	NovelBoundary	0	14.09	23.07	17.65	15.04	1.96	10.75	35.56
164	E39a_E40a	KnownJunction	1	10.05	31.89	27.56	27.61	768.81	39.23	80.03
165	E40_Aa	NovelBoundary	1	19.43	26.69	7.75	12.33	4.31	6.70	29.78
166	ER40a	ExonRegion	1	26.51	49.35	26.54	45.03	710.16	55.03	116.80
167	E40_Da	NovelBoundary	1	31.03	46.19	8.82	17.83	3.48	10.45	28.76
168	E40a_E41a	KnownJunction	1	13.80	22.78	13.91	30.91	716.62	38.03	78.34
169	E41_Aa	NovelBoundary	0	19.63	12.74	13.29	13.98	5.00	5.60	19.48
170	ER41a	ExonRegion	0	19.90	21.01	29.63	39.23	778.45	58.38	102.28
171	E41_Da	NovelBoundary	1	18.19	17.10	7.24	13.41	3.30	6.30	23.16
172	E41a_E42a	KnownJunction	1	8.08	15.47	21.76	44.29	819.14	72.09	85.11
173	E42_Aa	NovelBoundary	1	18.31	38.17	3.29	12.54	9.08	5.98	26.14
174	ER42a	ExonRegion	0	20.61	36.52	30.84	39.00	662.10	63.94	92.07
175	E42_Da	NovelBoundary	1	13.42	17.05	2.34	2.71	2.14	2.79	19.38
176	E42a_E43a	KnownJunction	1	8.33	15.18	20.06	24.17	411.10	56.28	43.30
177	E43_Aa	NovelBoundary	1	3.37	27.82	5.07	11.22	2.17	0.00	14.35
178	ER43a	ExonRegion	0	45.43	42.97	54.23	45.71	1005.04	71.80	111.13
179	ER43b	ExonRegion	0	8.34	2.60	3.77	0.36	3.24	0.00	4.24