Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CTNS	Gene	0	47.37	28.72	54.76	43.97	35.52	27.44	35.24
2	381870	Transcript	0	2.65	1.29	3.90	2.21	2.27	2.20	1.55
3	46640	Transcript	0	25.41	24.99	33.82	27.94	17.01	23.00	20.95
4	399306	Transcript	0	7.04	4.38	3.69	2.14	6.15	2.29	7.77
5	ER1a	ExonRegion	0	7.33	7.25	4.06	2.85	1.40	2.50	7.86
6	E1_Da	KnownBoundary	0	8.75	7.93	5.40	6.83	2.28	4.23	10.22
7	E1a_E2b	KnownJunction	0	1.75	0.00	2.49	0.00	0.00	0.00	0.76
8	ER1b	ExonRegion	0	21.69	15.81	19.45	14.97	10.30	17.76	15.69
9	E1b_E2b	KnownJunction	0	20.48	29.87	28.77	26.06	8.55	25.03	17.34
10	ER2a	ExonRegion	0	6.53	7.59	8.13	5.61	3.04	5.52	5.23
11	ER2b	ExonRegion	0	64.07	38.47	63.38	52.31	39.73	47.56	41.73
12	E2_Da	NovelBoundary	1	10.35	2.15	1.44	7.86	0.00	4.64	10.22
13	E2a_E3a	KnownJunction	0	98.42	51.54	117.48	92.43	71.07	73.08	39.83
14	E2a_E7a	NovelJunction	1	0.00	1.63	0.00	0.00	0.00	9.73	2.46
15	I2	Intron	1	11.86	5.52	1.97	1.17	0.85	1.30	11.27
16	I2_SR1	SilentIntronRegion	1	12.01	5.65	2.00	1.19	0.83	1.32	11.48
17	E3_Aa	NovelBoundary	1	32.86	6.44	2.74	1.16	1.11	1.26	12.93
18	ER3a	ExonRegion	0	111.87	49.38	120.17	98.68	60.88	69.82	45.21
19	E3_Da	NovelBoundary	1	30.29	8.62	2.31	1.11	1.01	0.00	11.62
20	E3a_E4a	KnownJunction	0	100.54	51.26	120.85	58.79	43.02	42.08	56.95
21	E3a_E7a	NovelJunction	0	9.40	2.44	6.44	5.82	8.25	4.48	5.30
22	I3	Intron	1	8.88	4.34	1.38	1.99	1.09	1.49	9.73
23	I3_SR1	SilentIntronRegion	1	8.89	4.34	1.38	1.99	1.09	1.49	9.74
24	E4_Aa	NovelBoundary	1	9.83	5.46	2.10	2.74	3.27	1.47	14.95
25	ER4a	ExonRegion	0	116.85	43.27	126.04	92.80	78.19	65.07	56.60
26	E4_Da	NovelBoundary	1	6.38	1.26	0.00	5.50	0.00	1.34	9.33
27	E4a_E5a	KnownJunction	1	126.93	27.09	140.48	63.85	83.87	46.18	42.31
28	E4a_E7a	NovelJunction	0	1.57	4.86	7.76	7.50	15.58	1.23	6.13
29	I4	Intron	1	11.45	5.42	3.58	2.85	1.89	1.41	11.29
30	I4_SR1	SilentIntronRegion	1	11.47	5.43	3.59	2.86	1.89	1.41	11.31
31	E5_Aa	NovelBoundary	1	33.31	11.24	9.61	6.12	5.37	0.00	19.52
32	ER5a	ExonRegion	1	181.29	39.78	189.32	64.80	71.46	42.84	60.56
33	E5_Da	NovelBoundary	1	25.55	7.62	4.99	2.79	2.19	0.00	16.05
34	E5a_E6a	KnownJunction	0	2.00	1.10	0.00	0.00	4.17	0.00	3.71
35	E5a_E7a	KnownJunction	0	127.56	40.48	155.60	71.09	45.51	36.72	52.64
36	I5	Intron	1	14.37	5.23	2.67	1.54	2.84	1.32	11.08
37	I5_SR1	SilentIntronRegion	1	14.46	5.24	2.68	1.54	2.85	1.33	11.15
38	E6_Aa	NovelBoundary	1	19.44	8.64	7.13	4.23	3.94	5.12	27.73
39	ER6a	ExonRegion	1	12.60	4.44	2.93	0.82	11.25	1.35	14.36
40	I6	Intron	1	25.77	7.22	6.17	2.84	3.85	2.32	22.00
41	I6_SR1	SilentIntronRegion	1	25.80	7.23	6.18	2.84	3.85	2.32	22.03
42	E7_Aa	NovelBoundary	1	46.93	24.35	9.36	8.48	3.07	5.71	65.08
43	ER7a	ExonRegion	0	196.80	57.44	192.99	101.63	105.69	49.26	85.40
44	E7_Da	NovelBoundary	1	69.66	19.83	15.10	8.21	7.42	3.81	47.90
45	E7a_E8a	KnownJunction	0	176.60	54.99	191.59	97.56	150.19	43.76	74.54
46	I7	Intron	1	21.19	3.81	6.28	2.39	2.37	5.48	16.19
47	I7_SR1	SilentIntronRegion	1	21.50	3.85	6.37	2.42	2.40	5.57	16.43
48	E8_Aa	NovelBoundary	1	40.86	16.47	13.38	6.37	3.20	0.00	25.19
49	ER8a	ExonRegion	0	144.27	67.37	169.57	104.17	107.41	50.40	91.77
50	E8_Da	NovelBoundary	1	26.89	19.62	8.31	5.17	3.11	3.48	30.50
51	E8a_E9a	KnownJunction	0	78.19	53.70	104.33	83.20	89.24	38.11	48.90
52	I8	Intron	1	19.15	14.40	4.56	2.44	1.23	3.47	18.15
53	I8_SR1	SilentIntronRegion	1	19.20	14.44	4.58	2.45	1.24	3.48	18.20
54	E9_Aa	NovelBoundary	0	2.87	7.78	1.08	0.00	4.73	0.00	3.63
55	ER9a	ExonRegion	0	73.08	53.48	118.52	95.27	90.95	44.18	75.61
56	E9_Da	NovelBoundary	1	7.68	4.26	2.97	4.12	1.01	0.00	11.91
57	E9a_E10a	KnownJunction	0	85.22	55.91	139.52	91.97	116.07	54.67	85.10
58	E10_Aa	NovelBoundary	0	10.88	7.88	4.89	5.39	0.00	4.93	6.09
59	ER10a	ExonRegion	0	64.21	48.21	97.57	81.72	90.07	45.55	72.03
60	E10_Da	NovelBoundary	1	19.94	9.96	8.69	2.22	6.13	4.69	18.24
61	E10a_E11a	KnownJunction	1	39.91	41.30	65.53	89.13	56.76	14.07	52.45
62	I10	Intron	1	9.76	7.33	6.66	5.76	1.72	5.21	10.57
63	I10_SR1	SilentIntronRegion	1	17.73	13.39	9.81	7.71	2.99	7.40	18.34
64	E11_Aa	NovelBoundary	1	15.99	15.66	8.31	8.07	0.97	1.05	38.08
65	ER11a	ExonRegion	0	61.74	48.86	80.64	83.05	69.78	49.24	78.15
66	E11_Da	NovelBoundary	1	25.37	31.32	15.07	8.78	3.14	8.15	30.02
67	E11a_E12a	KnownJunction	0	61.69	35.47	112.66	80.62	61.53	43.55	60.72
68	I11	Intron	1	24.59	16.90	11.27	7.79	3.57	9.14	21.73
69	I11_SR1	SilentIntronRegion	1	24.62	16.92	11.29	7.80	3.57	9.15	21.76
70	E12_Aa	NovelBoundary	1	36.13	28.06	17.42	17.69	2.24	7.34	31.70
71	ER12a	ExonRegion	0	75.89	51.52	116.59	94.92	67.53	60.46	63.62
72	E12_Da	NovelBoundary	0	16.62	13.58	14.46	8.05	1.18	6.59	22.20
73	E12a_E13a	KnownJunction	0	50.44	45.45	78.89	67.43	54.68	45.00	34.42
74	I12	Intron	1	9.84	7.44	4.26	3.99	1.40	4.28	9.78
75	I12_SR1	SilentIntronRegion	1	9.91	7.49	4.30	4.01	1.42	4.31	9.85
76	E13_Aa	NovelBoundary	1	15.96	12.61	4.76	4.17	1.08	3.08	12.77
77	ER13a	ExonRegion	0	58.57	47.07	89.00	80.26	60.89	45.55	52.20
78	E13_Da	KnownBoundary	1	38.00	40.98	79.18	54.43	30.11	29.83	39.20
79	E13a_E13b	KnownJunction	0	3.55	2.57	5.32	4.42	4.54	4.40	2.34
80	ER13b	ExonRegion	0	34.06	29.27	53.24	42.79	32.18	26.21	29.81
81	E13_Ab	KnownBoundary	0	34.87	24.96	27.07	43.26	28.19	24.15	32.82
82	ER13c	ExonRegion	0	32.49	23.96	36.37	34.59	23.44	21.77	26.40