Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CNOT1	Gene	0	367.69	323.35	458.07	355.22	891.72	291.08	399.92
2	394200	Transcript	0	49.94	21.43	48.71	30.38	108.88	12.87	44.08
3	245138	Transcript	0	192.47	219.00	209.78	209.85	0.00	204.03	232.71
4	317147	Transcript	0	571.10	500.04	590.41	573.10	2250.58	599.02	738.00
5	IG42_AR3	ActiveIntergenicRegion	0	42.12	13.24	35.32	19.43	109.43	18.17	71.63
6	IG42_SR3	SilentIntergenicRegion	0	4.85	2.01	4.32	7.05	4.07	5.07	13.08
7	IG42_AR2	ActiveIntergenicRegion	0	2.83	2.01	2.85	2.08	3.40	2.30	8.87
8	ER1a	ExonRegion	1	106.43	94.85	63.24	142.23	84.42	139.80	27.27
9	E1a_E2a	KnownJunction	0	54.68	44.95	39.43	52.72	21.76	44.68	31.62
10	ER2a	ExonRegion	0	178.51	236.65	219.34	228.51	267.95	191.13	161.44
11	E2a_E3a	KnownJunction	0	357.43	273.30	395.62	284.70	522.22	236.53	269.20
12	ER3a	ExonRegion	0	272.21	313.95	382.21	344.14	363.69	244.61	265.43
13	E3a_E4a	KnownJunction	0	246.26	290.56	371.21	290.44	386.48	219.46	210.77
14	ER4a	ExonRegion	0	317.78	323.84	431.60	336.47	461.30	246.78	297.86
15	E4a_E5a	KnownJunction	0	301.50	366.38	441.86	392.25	742.62	279.09	311.42
16	ER5a	ExonRegion	0	225.49	265.74	388.31	288.05	440.31	214.14	249.48
17	E5a_E6a	KnownJunction	0	221.11	237.36	376.96	252.54	403.84	214.02	234.79
18	ER6a	ExonRegion	0	215.01	244.67	339.15	231.46	363.62	191.57	227.35
19	E6a_E7a	KnownJunction	0	135.81	183.24	234.31	172.52	324.75	142.49	159.06
20	ER7a	ExonRegion	0	226.22	244.80	296.71	240.49	331.71	176.30	175.39
21	E7a_E8a	KnownJunction	0	326.10	268.86	384.21	325.31	378.60	223.67	195.81
22	ER8a	ExonRegion	1	421.54	297.58	403.16	364.08	472.02	222.21	215.51
23	E8a_E9a	KnownJunction	0	442.65	335.33	469.64	360.04	586.30	217.05	257.59
24	ER9a	ExonRegion	0	355.12	340.30	411.84	363.16	560.60	199.93	286.87
25	E9a_E10a	KnownJunction	0	267.99	298.89	364.83	308.49	478.02	178.94	255.20
26	E10_Aa	NovelBoundary	1	108.72	0.00	148.40	1.60	0.00	5.33	2.58
27	ER10a	ExonRegion	0	292.91	318.80	408.66	318.89	617.26	181.70	293.68
28	E10a_E11a	KnownJunction	0	366.66	313.26	478.12	373.91	691.95	212.41	319.75
29	ER11a	ExonRegion	0	405.19	373.14	543.77	355.60	662.92	209.87	345.75
30	E11a_E12a	KnownJunction	0	416.61	359.05	558.26	343.27	855.84	215.15	311.49
31	ER12a	ExonRegion	0	439.41	340.86	576.55	351.21	826.59	224.02	376.98
32	E12a_E13a	KnownJunction	0	472.84	315.31	506.40	334.11	807.77	205.26	281.30
33	ER13a	ExonRegion	0	778.14	434.21	653.00	481.72	1354.97	279.38	476.14
34	E13a_E14a	KnownJunction	0	726.38	487.05	551.09	503.76	1439.05	265.13	526.49
35	ER14a	ExonRegion	0	590.15	430.84	510.45	429.59	1294.03	270.68	510.74
36	E14a_E15a	KnownJunction	0	401.59	344.47	406.95	286.08	864.69	217.67	372.66
37	ER15a	ExonRegion	0	240.79	333.34	367.86	325.15	698.20	221.32	382.43
38	E15a_E16a	KnownJunction	0	176.51	294.08	332.03	269.18	539.81	194.27	291.21
39	ER16a	ExonRegion	0	198.58	290.88	363.72	281.88	532.86	192.38	320.43
40	E16a_E17a	KnownJunction	0	191.90	322.40	351.15	302.77	533.28	220.62	345.42
41	ER17a	ExonRegion	0	433.14	393.15	542.24	377.36	923.36	285.50	502.07
42	E17a_E18a	KnownJunction	0	294.54	485.60	434.98	447.98	630.03	395.73	491.87
43	ER18a	ExonRegion	0	521.06	424.97	566.95	423.47	1047.51	347.18	481.29
44	E18a_E19a	KnownJunction	0	286.07	343.03	380.31	331.73	621.50	266.76	304.43
45	ER19a	ExonRegion	0	407.77	361.13	449.48	356.73	713.98	267.55	349.06
46	E19_Da	NovelBoundary	0	164.78	170.76	203.43	175.66	267.21	133.81	141.97
47	E19a_E20a	KnownJunction	0	99.56	42.45	96.47	59.93	216.01	24.92	87.48
48	E19b_E20a	KnownJunction	0	209.34	226.64	300.44	245.74	503.43	208.48	222.82
49	ER19b	ExonRegion	0	223.87	239.89	307.58	261.86	473.49	204.58	226.21
50	ER20a	ExonRegion	0	315.24	269.86	470.24	277.86	712.71	217.30	304.45
51	E20a_E21a	KnownJunction	0	231.99	242.77	421.01	230.57	630.33	179.93	299.56
52	ER21a	ExonRegion	0	399.77	281.95	596.33	306.67	783.11	229.05	364.13
53	E21a_E22a	KnownJunction	0	457.14	358.47	636.95	375.40	855.56	246.24	410.21
54	E21a_E23a	NovelJunction	0	1.87	2.68	3.16	3.90	0.00	10.02	0.00
55	ER22a	ExonRegion	0	541.18	347.82	637.86	373.17	897.36	241.30	411.89
56	E22a_E23a	KnownJunction	0	571.63	331.07	593.65	330.24	907.34	219.95	335.00
57	ER23a	ExonRegion	0	326.70	257.97	433.35	272.60	616.06	192.10	296.31
58	E23a_E24a	KnownJunction	0	215.52	179.09	334.74	205.11	447.04	177.20	220.69
59	ER24a	ExonRegion	0	284.31	221.34	469.82	209.47	531.29	210.60	276.83
60	E24a_E25a	KnownJunction	0	288.03	274.12	509.47	244.04	545.45	265.77	321.34
61	ER25a	ExonRegion	0	380.47	292.88	598.62	304.92	793.61	292.90	405.22
62	E25a_E26a	KnownJunction	0	392.18	313.73	596.37	372.39	1009.76	304.10	442.10
63	E25a_E27a	NovelJunction	1	3.74	12.69	10.84	14.25	2.35	36.93	8.77
64	ER26a	ExonRegion	0	583.33	320.26	736.14	386.78	1375.34	318.93	542.52
65	E26a_E27a	KnownJunction	0	768.66	368.09	795.02	429.72	1770.90	298.82	577.87
66	ER27a	ExonRegion	0	882.31	521.05	956.03	595.91	1681.49	529.26	674.40
67	E27a_E28a	KnownJunction	0	1025.13	619.53	996.50	613.34	2090.89	574.51	662.96
68	ER28a	ExonRegion	0	953.63	542.32	1059.77	617.49	1950.56	556.92	786.63
69	E28a_E29a	KnownJunction	0	664.48	466.16	896.72	516.03	1595.53	472.77	702.28
70	ER29a	ExonRegion	0	472.49	421.40	621.65	434.08	1219.56	383.30	590.88
71	E29a_E30a	KnownJunction	0	288.79	394.02	443.18	446.84	1094.59	389.43	548.52
72	ER30a	ExonRegion	0	211.36	374.37	351.02	425.49	954.91	342.98	505.46
73	E30a_E31a	KnownJunction	0	292.94	453.13	413.94	429.61	1191.39	351.85	576.12
74	ER31a	ExonRegion	0	411.77	402.77	514.81	426.89	1253.12	361.54	600.19
75	E31a_E32a	KnownJunction	0	420.19	289.67	531.40	352.29	1404.82	334.25	479.76
76	ER32a	ExonRegion	0	274.94	263.01	396.03	314.16	995.37	246.54	386.19
77	E32a_E33a	KnownJunction	0	263.87	304.01	442.52	329.32	845.09	287.00	462.52
78	ER33a	ExonRegion	0	272.33	295.28	449.39	327.76	988.66	324.11	486.48
79	E33a_E34a	KnownJunction	0	326.64	273.09	439.78	308.81	928.71	301.18	454.55
80	ER34a	ExonRegion	0	313.07	286.26	445.57	306.46	965.26	294.97	449.34
81	E34a_E35a	KnownJunction	0	236.05	215.35	359.13	241.95	913.05	220.43	348.00
82	I34_AR1	ActiveIntronRegion	1	76.80	38.16	56.02	13.39	21.69	16.86	9.44
83	ER35a	ExonRegion	0	308.16	294.83	404.12	298.32	895.43	250.67	388.48
84	E35a_E36a	KnownJunction	0	242.55	267.44	335.36	286.60	753.34	245.11	308.89
85	ER36a	ExonRegion	0	292.27	285.26	381.20	323.50	916.34	269.74	344.61
86	E36a_E37a	KnownJunction	0	344.41	319.28	455.68	373.02	950.77	288.74	375.91
87	ER37a	ExonRegion	0	345.75	353.91	493.92	393.27	957.04	309.87	445.85
88	E37a_E38a	KnownJunction	0	272.96	382.43	425.51	431.81	1091.85	317.28	422.68
89	ER38a	ExonRegion	0	275.01	410.79	433.63	455.45	1064.14	335.68	467.61
90	E38a_E39a	KnownJunction	0	279.16	451.42	376.69	455.16	996.51	425.29	470.19
91	ER39a	ExonRegion	0	257.90	421.50	378.57	496.66	1097.28	354.04	527.95
92	E39_Da	NovelBoundary	0	71.17	91.66	65.77	65.34	111.30	66.41	83.38
93	E39a_E40a	KnownJunction	0	221.63	350.36	333.69	432.37	930.90	325.80	491.31
94	ER40a	ExonRegion	0	268.63	423.70	424.47	498.47	1204.40	401.56	562.83
95	E40a_E41a	KnownJunction	0	346.07	379.41	505.03	460.63	1432.46	383.21	541.28
96	ER41a	ExonRegion	0	519.40	443.02	680.70	538.51	1501.36	474.74	657.77
97	E41a_E42a	KnownJunction	0	752.82	515.13	846.08	585.33	1584.79	565.77	699.47
98	ER42a	ExonRegion	0	698.86	471.33	835.46	542.89	1715.70	534.32	701.06
99	E42a_E43a	KnownJunction	0	736.13	453.39	888.89	563.03	2133.22	535.38	737.39
100	ER43a	ExonRegion	0	808.43	472.42	975.31	527.72	1822.78	555.03	780.33
101	E43a_E44a	KnownJunction	0	583.76	454.76	793.11	521.61	1496.20	543.79	628.29
102	ER44a	ExonRegion	0	686.41	415.31	838.96	500.49	1677.98	507.88	674.84
103	E44a_E46a	KnownJunction	0	733.87	418.45	833.49	536.97	1891.07	513.97	745.53
104	ER45a	ExonRegion	0	0.32	0.40	0.96	0.83	1.75	0.82	0.67
105	ER46a	ExonRegion	0	770.05	499.67	825.17	575.92	1987.54	552.16	780.27
106	E46a_E47a	KnownJunction	0	725.14	465.37	712.02	543.37	2424.47	540.90	776.75
107	ER47a	ExonRegion	0	608.89	483.15	599.76	552.17	1742.59	551.18	733.37
108	E47a_E48a	KnownJunction	0	461.99	427.57	537.75	565.12	1318.99	580.19	725.14
109	ER48a	ExonRegion	0	532.26	495.28	587.82	584.67	1941.97	600.55	753.20
110	E48_Da	KnownBoundary	0	315.82	275.56	317.57	281.69	1147.41	316.42	452.33
111	E48a_E48b	KnownJunction	0	192.47	219.00	209.78	209.85	0.00	204.03	232.71
112	E48_Ab	KnownBoundary	0	202.22	169.50	202.03	215.78	765.12	201.80	199.06
113	ER48b	ExonRegion	0	571.10	500.04	590.41	573.10	2250.58	599.02	738.00
114	ER48c	ExonRegion	0	403.74	378.97	450.87	485.00	1392.81	482.94	480.31
115	E48b_E49a	KnownJunction	0	250.72	275.38	345.75	392.50	1021.45	425.50	382.63
116	ER49a	ExonRegion	0	343.99	376.58	444.43	448.93	1073.35	484.70	436.93
117	E49a_E50a	KnownJunction	0	325.79	376.15	379.79	443.07	948.92	484.35	411.78
118	ER50a	ExonRegion	0	104.90	124.86	124.11	154.28	319.30	142.60	136.28