Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CETP	Gene	0	0.43	1.13	0.54	2.74	0.09	5.02	0.06
2	200676	Transcript	0	0.37	0.00	0.00	2.21	0.00	3.68	0.00
3	379780	Transcript	0	0.00	0.00	0.00	1.57	0.00	1.66	0.00
4	IG4	Intergenic	0	0.26	1.32	0.45	4.28	0.03	14.15	0.04
5	IG4_SR1	SilentIntergenicRegion	0	0.26	1.32	0.45	4.29	0.03	14.15	0.04
6	ER1a	ExonRegion	0	0.24	0.37	0.00	3.42	0.00	11.62	0.00
7	E1_Da	NovelBoundary	0	0.00	1.08	0.00	3.01	0.00	20.39	0.00
8	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	I1	Intron	0	0.45	1.54	0.22	2.08	0.00	12.27	0.00
10	I1_SR1	SilentIntronRegion	0	0.45	1.54	0.22	2.09	0.00	12.30	0.00
11	E2_Aa	NovelBoundary	0	1.03	0.00	0.00	0.00	0.00	16.70	0.00
12	ER2a	ExonRegion	0	0.00	0.80	0.00	0.00	0.00	11.01	0.00
13	E2_Da	NovelBoundary	0	0.67	0.00	0.80	0.00	0.00	9.38	0.00
14	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	3.22	0.00
15	E3_Aa	NovelBoundary	0	0.00	3.26	0.00	3.09	0.00	8.52	0.00
16	ER3a	ExonRegion	0	0.41	0.00	0.00	2.23	0.00	6.41	0.36
17	E3_Da	NovelBoundary	0	0.58	3.10	0.00	2.63	0.00	14.39	0.00
18	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	1.30	0.00	4.34	0.00
19	E4_Aa	NovelBoundary	0	0.00	0.00	0.63	4.88	0.00	11.26	0.75
20	ER4a	ExonRegion	0	0.32	0.00	0.76	1.91	0.00	2.18	0.00
21	E4_Da	NovelBoundary	0	0.00	1.34	0.00	1.68	0.00	12.22	0.00
22	E4a_E5a	KnownJunction	0	1.00	0.00	2.31	1.54	0.00	1.37	0.00
23	E5_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	8.20	0.00
24	ER5a	ExonRegion	0	1.14	0.46	1.14	0.37	0.00	5.67	0.00
25	E5_Da	NovelBoundary	0	0.00	0.00	0.00	4.31	0.00	10.53	0.00
26	E5a_E6a	KnownJunction	0	0.00	1.63	0.00	0.00	0.00	8.63	0.00
27	ER6a	ExonRegion	0	0.75	1.20	1.33	1.87	0.00	4.43	0.00
28	E6a_E7a	KnownJunction	0	0.00	1.50	3.29	3.01	0.00	2.65	0.00
29	ER7a	ExonRegion	0	0.00	1.83	2.49	2.47	0.00	5.37	0.00
30	E7_Da	NovelBoundary	0	0.00	0.00	0.00	1.08	0.00	8.63	0.00
31	E7a_E8a	KnownJunction	0	0.00	1.63	0.66	2.28	0.00	7.48	0.00
32	ER8a	ExonRegion	0	0.00	1.44	0.49	2.56	0.00	4.54	0.00
33	E8_Da	NovelBoundary	0	0.00	0.00	0.00	5.47	0.00	9.49	0.00
34	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	2.17	0.00	4.26	0.00
35	E8a_E10a	KnownJunction	0	0.00	0.00	0.00	1.57	0.00	1.66	0.00
36	ER9a	ExonRegion	0	0.23	0.00	0.00	1.79	0.00	2.93	0.00
37	E9a_E10a	KnownJunction	0	0.87	0.00	0.00	2.68	0.00	3.86	0.00
38	ER10a	ExonRegion	0	0.32	0.86	0.00	5.33	0.00	3.15	0.00
39	E10a_E11a	KnownJunction	0	0.00	2.68	0.00	5.85	0.00	0.00	0.00
40	ER11a	ExonRegion	0	1.29	1.94	0.00	7.11	0.02	3.12	0.00
41	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	7.64	0.00	1.66	0.00
42	ER12a	ExonRegion	0	0.00	1.86	0.00	5.30	1.17	0.65	0.00
43	E12a_E13a	KnownJunction	0	0.77	3.26	0.00	0.00	0.00	0.00	0.00
44	ER13a	ExonRegion	0	0.00	3.64	0.00	1.03	0.00	0.04	0.00
45	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	2.38	0.00	0.00	0.00
46	ER14a	ExonRegion	0	0.63	2.58	0.00	2.14	0.00	2.74	0.00
47	E14a_E15a	KnownJunction	0	1.87	1.26	0.00	0.00	0.00	1.34	0.00
48	ER15a	ExonRegion	0	0.57	1.34	1.60	1.90	0.86	1.94	0.00
49	E15a_E16a	KnownJunction	0	0.00	0.00	3.06	1.33	0.97	0.00	0.00
50	ER16a	ExonRegion	0	0.46	2.17	1.56	2.34	0.04	2.58	0.20
51	IG5_SR1	SilentIntergenicRegion	0	0.45	1.31	0.33	3.28	0.42	8.84	0.00