Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ERI2	Gene	0	24.86	4.63	9.64	4.49	37.64	4.78	24.29
2	357967	Transcript	0	7.14	8.31	4.42	4.89	7.78	4.73	9.81
3	396074	Transcript	0	0.00	0.00	0.00	0.00	0.12	0.00	0.00
4	389345	Transcript	0	0	0	0	0	0	0	0
5	300005	Transcript	0	0	0	0	0	0	0	0
6	IG15_AR3	ActiveIntergenicRegion	0	8.59	5.06	5.66	4.50	3.84	8.35	4.53
7	IG15_SR2	SilentIntergenicRegion	0	7.48	4.86	6.27	9.65	0.00	6.06	0.67
8	IG15_AR1	ActiveIntergenicRegion	0	15.77	17.91	14.12	21.43	8.47	13.83	17.63
9	ER1a	ExonRegion	0	0.41	5.93	0.74	3.83	0.13	1.27	2.01
10	E1a_E2a	KnownJunction	0	3.86	19.07	4.87	5.58	1.18	9.70	10.56
11	Ix	Intron	0	11.70	6.51	15.12	13.20	1.75	8.99	8.25
12	Ix_SR2	SilentIntronRegion	0	10.60	4.59	16.04	7.01	1.08	2.83	4.41
13	Ix_AR1	ActiveIntronRegion	0	17.73	7.62	18.95	16.85	2.14	12.90	11.41
14	Ix_SR1	SilentIntronRegion	0	13.09	9.10	15.18	21.55	2.66	15.95	12.54
15	E2_Aa	NovelBoundary	0	8.90	5.96	14.93	13.60	0.00	13.72	8.04
16	ER2a	ExonRegion	0	5.90	13.05	6.05	9.98	2.52	7.54	10.50
17	E2_Da	NovelBoundary	0	11.67	7.99	16.40	11.13	0.00	2.57	8.20
18	E2a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	Ix_SR5	SilentIntronRegion	0	16.76	7.13	17.72	8.85	1.86	6.20	6.79
20	Ix_AR4	ActiveIntronRegion	0	16.86	10.37	16.87	10.20	1.19	6.15	5.29
21	Ix_SR4	SilentIntronRegion	0	18.24	6.15	24.88	19.12	2.96	17.12	7.39
22	Ix_AR3	ActiveIntronRegion	0	21.62	9.03	22.26	16.20	3.42	13.64	7.72
23	I2	Intron	1	29.24	19.14	26.13	38.37	13.09	42.98	40.26
24	I2_AR1	ActiveIntronRegion	1	17.17	2.67	19.27	11.16	6.52	16.67	20.17
25	I2_AR2	ActiveIntronRegion	1	60.88	42.41	55.20	81.18	30.24	96.69	80.96
26	I2_SR1	SilentIntronRegion	1	6.31	2.22	4.81	7.47	0.61	4.02	10.67
27	I2_AR3	ActiveIntronRegion	1	5.89	1.21	5.87	7.48	0.00	0.00	12.82
28	I2_SR2	SilentIntronRegion	1	3.90	2.23	6.56	3.32	0.20	0.78	9.55
29	Ix	Intron	1	4.33	1.89	3.67	4.87	1.06	1.95	11.00
30	Ix_AR1	ActiveIntronRegion	0	2.78	3.76	4.88	3.85	1.12	0.63	8.96
31	Ix_SR1	SilentIntronRegion	0	4.46	1.74	3.57	4.96	1.05	2.06	11.18
32	Ix	Intron	1	5.67	1.57	3.01	5.74	1.61	2.95	9.91
33	Ix_SR2	SilentIntronRegion	0	4.71	0.96	5.72	4.18	3.62	4.91	8.76
34	Ix_AR3	ActiveIntronRegion	0	4.61	2.43	6.89	11.22	4.05	6.13	14.50
35	Ix_SR1	SilentIntronRegion	0	6.17	1.73	2.99	6.54	1.33	3.12	11.69
36	Ix_AR2	ActiveIntronRegion	0	13.47	3.20	3.96	9.25	2.56	6.13	16.26
37	Ix	Intron	1	5.71	1.33	3.21	9.06	1.38	2.24	9.86
38	Ix_AR1	ActiveIntronRegion	0	5.77	1.34	3.24	9.13	1.39	2.26	9.95
39	Ix	Intron	1	9.47	2.61	4.99	9.75	1.91	4.02	15.65
40	Ix_SR1	SilentIntronRegion	0	10.20	2.74	5.36	10.29	2.08	4.17	16.64
41	Ix	Intron	1	6.56	1.38	3.54	6.65	1.53	3.93	11.16
42	Ix_AR1	ActiveIntronRegion	0	3.18	1.88	3.80	7.39	1.79	5.43	12.45
43	Ix_SR1	SilentIntronRegion	0	7.72	1.21	3.45	6.41	1.45	3.43	10.74
44	Ix	Intron	0	13.83	1.72	2.72	8.11	0.92	3.28	4.81
45	Ix_SR1	SilentIntronRegion	0	13.87	1.73	2.73	8.14	0.92	3.29	4.82
46	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.12	0.00	0.00
47	ER4a	ExonRegion	0	0.93	1.88	0.49	0.00	7.29	0.00	1.79
48	E4_Da	NovelBoundary	1	1.87	3.26	0.00	1.68	0.00	0.00	7.80
49	E4a_E5a	KnownJunction	0	2.00	4.39	0.00	0.00	3.25	0.00	6.19
50	I4_AR1	ActiveIntronRegion	1	3.73	2.25	1.57	3.85	3.66	1.26	7.75
51	ER5a	ExonRegion	0	9.36	3.75	6.45	2.55	23.43	2.00	13.81
52	E5a_E6a	KnownJunction	0	27.45	3.63	13.59	6.39	36.91	4.37	24.32
53	ER6a	ExonRegion	0	39.27	6.62	17.93	9.01	43.98	5.04	44.13
54	E6a_E7a	KnownJunction	0	45.61	13.87	15.97	8.21	42.83	4.21	56.88
55	ER7a	ExonRegion	0	45.91	14.22	16.20	6.74	67.26	6.23	49.56
56	E7a_E8a	KnownJunction	0	55.91	9.59	12.85	6.75	58.76	2.95	38.67
57	ER8a	ExonRegion	0	39.20	6.25	13.72	4.06	53.09	5.10	36.26
58	E8a_E9a	KnownJunction	0	41.52	3.94	9.64	1.68	40.04	10.93	24.84
59	ER9a	ExonRegion	0	43.04	2.63	16.11	2.62	49.10	7.88	38.01
60	E9a_E10a	KnownJunction	0	37.60	5.67	16.12	2.90	51.13	3.97	46.26
61	ER10a	ExonRegion	0	34.88	5.33	12.75	5.57	53.95	8.93	41.24
62	E10a_E11a	KnownJunction	0	39.91	5.86	14.23	4.98	60.68	6.67	36.99
63	ER11a	ExonRegion	0	37.79	5.88	13.04	7.23	46.02	9.04	29.41
64	E11a_E12a	KnownJunction	0	18.78	4.60	7.14	2.71	42.46	3.91	8.86
65	E11a_E13a	KnownJunction	0	0.58	3.26	1.45	1.30	1.13	0.00	0.73
66	ER12a	ExonRegion	0	35.17	6.49	13.01	5.20	60.37	6.46	32.16
67	E12_Da	KnownBoundary	0	51.76	7.22	19.34	7.96	60.79	9.70	32.07
68	ER12b	ExonRegion	0	25.52	3.47	10.43	5.04	35.09	5.16	25.98
69	ER13a	ExonRegion	0	0.79	1.01	0.79	2.03	2.05	0.00	1.35
70	E13a_E14a	KnownJunction	0	0.58	0.00	0.00	0.00	0.00	0.00	0.57
71	ER14a	ExonRegion	0	2.71	0.60	0.03	0.71	2.04	0.00	1.41
72	E14a_E15a	KnownJunction	0	1.82	1.63	0.50	1.68	4.61	0.00	2.19
73	Ix_AR1	ActiveIntronRegion	0	0.72	0.00	1.01	0.60	9.32	0.00	0.00
74	E15_Aa	NovelBoundary	0	3.27	1.29	5.95	2.49	36.47	1.39	0.00
75	ER15a	ExonRegion	0	1.07	0.25	0.53	1.30	1.83	0.34	1.70