Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CLN3	Gene	0	78.45	45.14	42.96	51.36	46.48	19.54	45.18
2	360019	Transcript	0	9.23	3.53	6.47	4.70	3.28	1.79	3.71
3	359734	Transcript	0	0.00	0.00	0.68	0.00	1.01	0.00	0.00
4	402339	Transcript	0	1.70	0.00	3.25	1.35	0.00	1.66	0.63
5	357076	Transcript	0	3.37	1.98	0.87	2.88	2.95	0.35	2.38
6	357806	Transcript	0	0	0	0	0	0	0	0
7	357857	Transcript	0	4.69	7.36	5.62	3.06	6.39	2.63	2.95
8	355477	Transcript	0	2.64	0.00	1.60	1.44	3.20	0.00	0.00
9	333496	Transcript	0	6.27	0.78	1.67	1.35	1.39	1.56	3.69
10	395653	Transcript	0	0.78	4.54	3.18	1.03	0.00	0.00	0.00
11	354630	Transcript	0	0.00	0.00	0.89	3.36	0.00	0.00	0.76
12	359984	Transcript	0	9.54	1.94	7.67	5.68	15.48	1.02	6.55
13	ER1a	ExonRegion	0	9.23	3.53	6.47	4.70	3.28	1.79	3.71
14	E1a_E1d	KnownJunction	0	44.23	27.74	26.27	35.27	44.49	8.52	24.84
15	ER1b	ExonRegion	1	31.74	19.62	24.59	22.45	34.51	2.73	16.19
16	ER1c	ExonRegion	0	38.49	23.99	25.74	30.55	37.66	7.15	21.08
17	ER1d	ExonRegion	0	9.54	1.94	7.67	5.68	15.48	1.02	6.55
18	E1_Ad	KnownBoundary	0	7.51	2.63	5.33	9.92	5.33	4.10	8.61
19	ER1e	ExonRegion	0	55.04	31.86	25.66	40.66	27.80	18.15	27.45
20	E1b_E2a	KnownJunction	0	37.14	36.62	21.47	36.36	44.35	14.74	22.27
21	E1b_E3a	KnownJunction	0	4.69	7.36	5.62	3.06	6.39	2.63	2.95
22	E1b_E4a	KnownJunction	0	0.00	0.00	0.68	0.00	1.01	0.00	0.00
23	ER2a	ExonRegion	0	72.94	46.99	38.58	55.07	48.37	16.93	46.44
24	E2a_E3a	KnownJunction	0	124.27	57.11	56.79	64.72	63.51	29.24	80.37
25	E2a_E5a	KnownJunction	0	1.03	0.00	0.00	0.00	0.00	0.00	0.00
26	ER3a	ExonRegion	0	119.97	73.48	63.28	71.42	85.11	41.37	82.03
27	E3a_E4a	KnownJunction	0	95.93	75.11	53.39	68.38	89.68	35.43	59.81
28	E3a_E5a	KnownJunction	0	0.78	4.54	3.18	1.03	0.00	0.00	0.00
29	E3a_E6a	KnownJunction	0	1.70	0.00	3.25	1.35	0.00	1.66	0.63
30	ER4a	ExonRegion	0	103.66	76.22	60.02	74.14	106.65	35.91	76.54
31	E4a_E5a	KnownJunction	0	107.07	69.20	74.21	85.31	72.64	37.44	91.09
32	E4a_E6a	KnownJunction	0	2.27	2.63	2.64	2.47	5.03	0.00	3.97
33	ER5a	ExonRegion	0	119.77	90.95	66.64	100.46	76.40	31.00	114.66
34	E5a_E6a	KnownJunction	0	116.60	71.06	63.09	74.45	51.68	31.65	77.49
35	ER6a	ExonRegion	0	151.01	75.14	75.68	113.34	85.02	42.47	89.39
36	E6a_E7a	KnownJunction	0	184.51	71.27	89.28	113.97	86.70	39.48	104.45
37	E6a_E9a	KnownJunction	0	2.54	3.10	6.77	13.49	1.98	2.65	0.00
38	E6a_E10a	KnownJunction	0	0.00	1.05	0.00	1.52	0.97	0.00	0.00
39	ER7a	ExonRegion	0	148.76	64.60	82.60	90.67	119.84	29.79	101.41
40	E7a_E8a	KnownJunction	0	89.99	54.25	52.71	60.74	52.12	26.34	83.29
41	E7a_E9a	KnownJunction	0	2.64	0.00	1.60	1.44	3.20	0.00	0.00
42	ER8a	ExonRegion	0	95.64	56.83	48.16	53.67	48.23	22.19	56.69
43	E8a_E9a	KnownJunction	0	100.01	64.71	65.74	38.55	48.80	18.17	59.10
44	ER9a	ExonRegion	0	110.47	67.63	61.75	76.72	57.37	28.17	47.84
45	E9a_E10a	KnownJunction	0	95.55	66.02	66.51	69.98	43.32	21.31	43.81
46	ER10a	ExonRegion	0	136.06	88.25	71.56	82.59	49.35	33.70	66.35
47	E10_Da	KnownBoundary	0	5.17	0.00	2.73	2.71	1.18	0.00	4.01
48	E10a_E10b	KnownJunction	0	133.72	79.02	64.06	80.89	68.10	44.51	68.03
49	E10_Db	KnownBoundary	0	3.05	0.00	1.68	0.00	0.00	3.32	3.58
50	E10b_E10c	KnownJunction	0	0.00	0.00	0.89	3.36	0.00	0.00	0.76
51	ER10b	ExonRegion	0	6.57	1.48	4.03	5.06	0.90	2.45	6.26
52	ER10c	ExonRegion	0	9.26	1.47	2.77	2.32	2.12	3.21	5.23
53	E10_Ab	KnownBoundary	0	8.41	0.00	0.53	0.00	1.08	1.66	2.44
54	ER10d	ExonRegion	0	159.44	84.87	83.11	94.73	85.54	47.48	73.27
55	E10_Dd	KnownBoundary	0	160.34	73.67	93.65	97.80	87.51	46.26	63.57
56	ER10e	ExonRegion	0	167.78	68.44	89.87	89.78	88.81	47.00	73.08
57	ER10f	ExonRegion	0	169.48	78.76	98.05	90.47	87.31	38.07	73.42
58	E10_De	KnownBoundary	0	3.79	0.00	0.00	0.00	0.00	1.66	2.28
59	E10e_E10c	KnownJunction	0	157.65	73.72	87.86	76.72	90.87	24.98	70.20
60	ER10g	ExonRegion	0	8.51	0.88	2.24	1.73	2.05	1.47	5.85
61	E10_Ac	KnownBoundary	0	7.99	0.00	1.91	1.19	3.85	1.23	3.34
62	ER10h	ExonRegion	0	186.26	98.47	102.47	105.49	89.98	30.92	90.24
63	E10f_E11a	KnownJunction	0	205.39	99.41	102.10	100.94	88.27	38.16	97.57
64	E11_Aa	NovelBoundary	0	15.09	14.00	7.31	13.09	6.02	3.06	0.82
65	ER11a	ExonRegion	0	158.62	77.73	84.46	90.83	85.03	35.49	76.34
66	E11a_E12a	KnownJunction	0	6.89	3.86	1.62	5.31	5.37	1.05	5.73
67	E11a_E13a	KnownJunction	0	145.22	70.93	81.64	64.56	70.36	15.38	67.53
68	E12_Aa	NovelBoundary	0	485.28	561.97	418.58	509.94	292.66	604.31	255.39
69	ER12a	ExonRegion	0	3.22	1.01	1.00	1.80	2.50	0.00	1.41
70	E12_Da	NovelBoundary	0	177.91	101.99	169.93	93.44	37.21	87.77	114.87
71	ER13a	ExonRegion	0	142.62	73.54	82.38	91.41	83.46	36.89	71.94
72	E13a_E14a	KnownJunction	0	125.96	68.57	69.09	83.77	73.86	24.07	68.03
73	ER14a	ExonRegion	0	59.93	44.11	34.77	45.76	30.68	12.97	34.78
74	ER14b	ExonRegion	0	15.72	11.31	8.96	8.97	15.45	3.96	13.75