Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MKL2	Gene	0	77.77	24.36	63.25	17.08	56.21	10.80	55.78
2	389126	Transcript	0	9.85	8.32	9.03	3.42	21.39	2.45	4.87
3	343519	Transcript	0	7.86	6.58	5.39	2.67	6.64	2.86	0.84
4	318282	Transcript	0	0	0	0	0	0	0	0
5	341243	Transcript	0	23.00	12.22	16.49	10.55	18.24	4.49	32.02
6	IG3_AR1	ActiveIntergenicRegion	0	12.23	3.33	21.54	4.00	20.21	6.30	23.50
7	IG3_SR1	SilentIntergenicRegion	0	9.64	2.50	16.95	1.54	12.72	2.56	10.30
8	IG3_AR2	ActiveIntergenicRegion	0	8.78	3.35	16.04	3.03	10.58	5.55	18.91
9	ER1a	ExonRegion	0	9.85	8.32	9.03	3.42	21.39	2.45	4.87
10	ER2a	ExonRegion	0	9.73	4.86	7.23	1.66	31.31	0.82	4.95
11	ER2b	ExonRegion	0	58.50	24.41	44.79	9.68	112.22	5.42	30.02
12	E2a_E3a	KnownJunction	0	52.16	24.75	37.69	10.00	9.18	6.22	32.63
13	I2_AR1	ActiveIntronRegion	0	13.73	7.93	10.73	3.49	9.43	1.15	8.18
14	ER3a	ExonRegion	1	64.07	59.09	53.96	22.46	64.56	12.02	42.47
15	E3a_E5a	KnownJunction	0	38.77	63.31	54.38	28.23	49.15	13.59	38.37
16	I3_AR4	ActiveIntronRegion	0	7.58	4.00	4.16	2.10	11.64	0.85	4.45
17	I3_AR5	ActiveIntronRegion	0	5.56	1.88	3.58	1.85	12.23	0.74	2.62
18	ER4a	ExonRegion	0	0.00	0.76	0.00	0.78	0.34	0.00	0.42
19	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER5a	ExonRegion	1	42.02	66.15	54.92	24.86	32.50	10.92	38.16
21	E5a_E6a	KnownJunction	1	44.61	49.34	38.24	16.12	23.38	6.89	31.53
22	ER6a	ExonRegion	1	60.72	50.13	52.40	21.24	32.80	6.37	30.54
23	E6a_E7a	KnownJunction	1	63.92	43.16	62.44	20.35	46.89	6.43	30.14
24	ER7a	ExonRegion	0	101.41	43.59	93.57	22.79	64.48	15.18	43.61
25	E7a_E8a	KnownJunction	0	122.37	52.54	95.36	25.03	44.42	12.94	50.32
26	ER8a	ExonRegion	0	103.37	57.68	87.85	25.01	53.69	15.79	49.96
27	E8a_E9a	KnownJunction	0	144.60	55.67	113.47	36.33	130.34	20.10	62.23
28	ER9a	ExonRegion	0	110.20	45.32	81.80	25.76	54.21	16.71	64.09
29	E9a_E10a	KnownJunction	0	104.51	40.09	73.62	20.13	49.52	19.81	71.07
30	ER10a	ExonRegion	0	88.89	50.34	62.30	25.15	63.94	16.94	62.05
31	E10a_E11a	KnownJunction	1	49.20	45.50	48.86	12.46	28.89	16.72	45.01
32	ER11a	ExonRegion	0	44.03	38.10	51.22	15.54	41.46	14.19	53.82
33	E11a_E12a	KnownJunction	0	3.91	3.84	2.51	2.17	3.04	2.92	0.00
34	E11a_E13a	KnownJunction	1	44.25	20.39	43.40	5.77	23.49	7.85	56.64
35	E12_Aa	NovelBoundary	0	3.79	10.30	3.38	2.79	7.31	4.31	3.70
36	ER12a	ExonRegion	0	11.82	9.32	8.27	3.17	10.24	2.79	1.69
37	E12_Da	NovelBoundary	1	21.18	7.62	12.70	1.14	13.05	8.33	2.25
38	ER13a	ExonRegion	0	50.86	24.53	52.93	22.05	47.67	9.60	56.80
39	E13a_E14a	KnownJunction	0	52.96	24.20	52.52	22.54	43.66	7.77	51.85
40	ER14a	ExonRegion	0	56.66	32.11	50.52	24.13	42.29	11.82	59.65
41	E14_Da	KnownBoundary	1	46.26	34.76	34.35	13.98	50.46	14.10	77.25
42	E14a_E15a	KnownJunction	0	4.99	0.00	0.00	1.14	1.15	0.00	3.51
43	ER14b	ExonRegion	0	43.27	26.43	33.33	21.52	37.37	11.34	67.86
44	E14_Db	NovelBoundary	1	3.12	5.28	1.38	8.48	4.68	0.00	3.30
45	E14b_E15a	KnownJunction	0	48.72	21.70	32.65	19.91	35.27	6.62	59.81
46	ER15a	ExonRegion	0	73.77	31.73	57.89	29.95	54.36	13.17	91.32
47	E15_Da	NovelBoundary	1	39.00	0.00	26.74	0.00	1.18	0.00	2.72
48	E15a_E16a	KnownJunction	0	98.75	40.88	56.14	29.80	41.26	10.99	110.37
49	ER16a	ExonRegion	0	110.91	37.66	74.50	33.28	53.63	18.88	96.35
50	E16a_E17a	KnownJunction	1	105.13	35.60	62.04	20.54	53.94	5.63	83.01
51	ER17a	ExonRegion	0	74.83	20.71	53.13	16.33	38.97	5.93	55.37
52	E17a_E18a	KnownJunction	0	32.95	16.84	28.86	11.03	23.24	2.97	36.32
53	ER18a	ExonRegion	0	52.68	20.75	34.66	14.00	24.71	3.90	37.32
54	E18a_E19a	KnownJunction	0	68.73	24.59	36.10	17.77	21.09	5.25	37.53
55	ER19a	ExonRegion	0	86.74	18.80	69.73	15.03	62.86	10.51	57.56