Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MYH11	Gene	0	1.90	2.87	46.47	178.61	3.64	65.35	3.42
2	300036	Transcript	0	0	0	0	0	0	0	0
3	338282	Transcript	0	0	0	0	0	0	0	0
4	396324	Transcript	0	0	0	0	0	0	0	0
5	396320	Transcript	0	0	0	0	0	0	0	0
6	ER1a	ExonRegion	0	0.00	1.81	25.45	99.96	0.00	18.43	0.00
7	E1a_E2a	KnownJunction	0	0.00	1.29	24.76	87.67	0.00	25.81	0.00
8	ER2a	ExonRegion	0	0.36	2.24	30.05	146.56	1.38	50.58	0.00
9	E2a_E3a	KnownJunction	0	1.79	1.63	70.16	251.62	1.06	97.66	0.00
10	ER3a	ExonRegion	0	0.31	2.64	51.80	211.84	2.87	74.55	0.00
11	E3a_E4a	KnownJunction	0	0.00	0.00	30.22	114.65	3.20	50.73	0.00
12	E4a_E5a	KnownJunction	0	1.03	1.58	38.10	118.36	0.00	35.70	0.00
13	ER4a	ExonRegion	0	0.77	1.21	45.92	159.88	1.33	60.64	0.00
14	ER5a	ExonRegion	0	0.33	2.21	43.85	175.89	0.80	61.94	0.00
15	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	E5a_E7a	KnownJunction	0	0.00	3.10	55.14	184.35	0.00	68.23	0.00
17	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	ER6a	ExonRegion	0	0.00	0.00	0.03	0.00	0.00	0.06	0.00
19	ER7a	ExonRegion	0	0.56	3.70	62.89	228.82	2.81	68.46	0.00
20	E7a_E8a	KnownJunction	0	0.65	6.46	53.47	237.86	1.13	64.43	0.00
21	ER8a	ExonRegion	0	0.10	5.39	59.47	201.09	3.30	62.28	0.00
22	E8a_E9a	KnownJunction	0	0.00	4.49	58.40	163.66	4.63	58.42	0.00
23	ER9a	ExonRegion	0	0.49	2.50	63.52	193.18	2.76	50.15	0.00
24	E9a_E10a	KnownJunction	0	0.73	2.39	66.22	217.16	0.00	49.58	0.00
25	ER10a	ExonRegion	0	0.07	2.73	52.39	208.11	3.23	49.64	0.07
26	E10a_E11a	KnownJunction	0	0.00	3.13	51.45	223.88	3.41	47.84	0.64
27	ER11a	ExonRegion	0	0.00	2.02	58.77	217.80	4.13	71.55	0.44
28	E11a_E12a	KnownJunction	0	0.00	2.89	59.22	185.87	0.00	91.57	0.00
29	ER12a	ExonRegion	0	0.16	0.50	53.41	189.75	2.39	58.91	1.18
30	E12a_E13a	KnownJunction	0	0.93	0.00	50.60	185.47	4.36	53.22	0.63
31	ER13a	ExonRegion	0	1.40	2.39	54.77	170.34	3.23	60.28	2.08
32	E13a_E14a	KnownJunction	0	0.00	2.39	38.80	171.22	0.99	40.17	0.00
33	ER14a	ExonRegion	0	0.67	4.66	34.54	162.98	2.54	46.36	2.63
34	E14a_E15a	KnownJunction	0	0.00	1.34	27.35	152.63	1.18	47.52	0.00
35	ER15a	ExonRegion	0	1.01	2.00	36.11	161.57	2.01	40.86	3.48
36	E15a_E16a	KnownJunction	0	0.00	1.63	25.08	172.43	3.41	46.74	0.00
37	I15_AR2	ActiveIntronRegion	0	1.77	0.64	9.14	6.37	0.14	3.17	10.02
38	E16_Aa	NovelBoundary	0	0.97	0.00	5.14	10.05	0.00	0.00	8.60
39	ER16a	ExonRegion	0	1.02	1.43	36.09	164.54	2.67	37.40	4.47
40	E16_Da	NovelBoundary	0	0.80	0.00	4.07	7.99	0.00	1.63	8.24
41	E16a_E17a	KnownJunction	0	0.00	5.73	23.42	140.55	3.41	50.76	0.00
42	ER17a	ExonRegion	0	0.90	4.62	29.17	156.08	2.66	49.63	3.95
43	E17a_E18a	KnownJunction	0	0.00	0.00	27.99	125.78	0.00	60.54	0.00
44	E18_Aa	NovelBoundary	0	0.00	2.71	7.90	8.18	0.00	0.00	10.65
45	ER18a	ExonRegion	0	0.94	0.77	24.62	153.43	2.17	44.97	2.50
46	E18_Da	NovelBoundary	0	0.00	4.15	5.22	8.91	0.00	4.31	8.33
47	E18a_E19a	KnownJunction	0	0.00	0.00	16.86	140.03	2.01	44.89	0.00
48	E19_Aa	NovelBoundary	0	2.35	6.67	7.11	7.94	0.00	1.55	10.98
49	ER19a	ExonRegion	0	0.00	1.02	30.57	169.16	1.82	44.28	0.00
50	E19_Da	NovelBoundary	0	2.05	8.75	8.41	14.90	1.13	2.95	10.10
51	E19a_E20a	KnownJunction	0	0.00	1.26	43.70	188.80	2.97	41.54	0.00
52	I19	Intron	0	2.84	3.87	5.72	7.26	0.00	0.65	7.48
53	I19_SR1	SilentIntronRegion	0	2.88	3.92	5.79	7.35	0.00	0.66	7.57
54	E20_Aa	NovelBoundary	0	3.71	3.26	10.06	5.01	0.00	3.08	14.36
55	ER20a	ExonRegion	0	0.00	1.82	25.95	144.55	1.93	30.51	4.75
56	E20a_E21a	KnownJunction	1	0.00	0.00	22.07	165.23	3.30	24.74	0.00
57	ER21a	ExonRegion	0	0.54	0.00	24.99	163.86	1.79	34.69	1.83
58	E21a_E22a	KnownJunction	0	0.00	0.00	24.99	184.41	3.16	37.31	0.00
59	E22_Aa	NovelBoundary	0	2.37	1.26	2.74	1.25	0.00	1.29	8.60
60	ER22a	ExonRegion	0	0.01	1.00	27.12	180.51	1.76	37.68	3.92
61	E22_Da	NovelBoundary	0	3.32	1.21	7.16	0.00	0.00	1.53	17.28
62	E22a_E23a	KnownJunction	0	0.00	1.63	29.33	170.13	1.18	42.64	0.00
63	ER23a	ExonRegion	0	1.02	3.99	25.32	125.67	1.76	31.91	5.40
64	E23_Da	NovelBoundary	0	1.03	3.13	4.25	4.01	0.00	4.29	9.63
65	E23a_E24a	KnownJunction	0	0.00	4.89	31.31	109.56	2.01	34.73	0.00
66	ER24a	ExonRegion	0	0.42	3.97	34.50	145.56	1.59	35.06	1.85
67	E24a_E25a	KnownJunction	0	0.00	5.88	44.98	156.13	0.88	52.39	0.00
68	ER25a	ExonRegion	0	1.88	4.58	59.94	197.66	1.69	65.90	1.67
69	E25a_E26a	KnownJunction	0	0.00	1.63	56.46	192.08	2.35	71.82	0.00
70	I25	Intron	0	4.82	1.30	6.17	5.31	1.28	3.15	9.76
71	I25_SR2	SilentIntronRegion	0	5.62	2.26	6.37	7.43	1.60	2.40	13.29
72	E26_Aa	NovelBoundary	0	5.96	2.23	4.43	11.24	0.00	2.57	10.83
73	ER26a	ExonRegion	0	4.05	5.35	53.97	172.57	3.99	62.11	10.09
74	E26_Da	NovelBoundary	0	2.90	2.52	6.27	12.46	4.20	8.01	13.47
75	E26a_E27a	KnownJunction	0	0.00	4.65	39.03	142.85	2.31	48.70	0.00
76	I26	Intron	0	4.79	2.48	10.97	9.13	2.76	4.92	17.05
77	I26_AR1	ActiveIntronRegion	0	3.51	1.37	8.39	7.56	2.61	8.29	18.73
78	I26_SR1	SilentIntronRegion	0	6.06	2.35	13.67	9.77	3.25	4.35	15.29
79	I26_AR2	ActiveIntronRegion	0	4.06	3.44	9.31	9.45	2.25	3.29	18.25
80	ER27a	ExonRegion	0	6.51	3.87	45.64	161.22	4.72	52.85	11.34
81	E27_Da	NovelBoundary	0	5.87	0.00	8.74	13.17	5.37	6.65	16.19
82	E27a_E28a	KnownJunction	0	0.00	1.39	31.40	175.58	2.28	42.83	0.00
83	I27	Intron	0	7.53	2.56	11.08	4.61	2.73	3.08	17.61
84	I27_AR1	ActiveIntronRegion	0	12.52	4.50	18.97	6.87	4.73	4.81	30.04
85	E28_Aa	NovelBoundary	0	16.07	7.20	15.52	30.64	4.63	16.83	32.30
86	ER28a	ExonRegion	0	8.20	7.56	36.26	163.21	6.91	55.85	42.73
87	E28_Da	NovelBoundary	0	10.73	5.41	26.73	43.62	13.62	16.08	55.84
88	E28a_E29a	KnownJunction	0	0.00	6.28	32.03	150.92	1.18	36.64	0.00
89	ER29a	ExonRegion	0	5.41	2.06	33.82	124.76	5.70	41.20	13.55
90	E29_Da	NovelBoundary	0	10.35	10.46	15.25	7.67	4.15	4.72	34.68
91	E29a_E30a	KnownJunction	0	0.00	0.00	33.27	139.84	2.14	62.60	0.00
92	E30_Aa	NovelBoundary	0	33.28	51.52	70.96	67.51	16.64	108.78	124.87
93	ER30a	ExonRegion	0	0.00	1.45	31.08	136.99	1.29	44.09	0.00
94	E30_Da	NovelBoundary	0	28.11	27.64	33.41	53.83	30.01	65.42	59.45
95	E30a_E31a	KnownJunction	0	0.00	1.44	30.78	157.91	4.33	50.12	0.00
96	E31_Aa	NovelBoundary	0	26.39	32.52	41.60	75.99	35.85	65.10	93.93
97	ER31a	ExonRegion	0	0.00	0.77	22.74	113.76	1.97	29.09	0.00
98	E31_Da	NovelBoundary	0	17.07	22.70	40.47	72.22	14.11	52.39	93.24
99	E31a_E32a	KnownJunction	0	0.00	0.00	35.32	155.80	0.85	36.39	0.00
100	E32_Aa	NovelBoundary	0	15.99	34.36	27.94	55.70	15.56	48.16	57.97
101	ER32a	ExonRegion	0	0.55	0.81	40.15	127.68	2.48	39.84	0.01
102	E32a_E33a	KnownJunction	0	0.00	1.16	58.30	161.92	3.20	46.10	0.00
103	ER33a	ExonRegion	0	2.99	3.62	54.75	161.17	3.42	45.11	1.67
104	E33a_E34a	KnownJunction	0	0.00	1.60	55.77	167.29	2.21	60.19	0.00
105	E34_Aa	NovelBoundary	0	12.35	0.00	2.69	1.11	0.00	1.10	6.59
106	ER34a	ExonRegion	0	6.02	2.24	52.20	228.07	4.51	73.44	2.17
107	E34a_E35a	KnownJunction	0	0.00	2.99	46.85	242.06	5.14	82.78	0.00
108	ER35a	ExonRegion	0	1.06	4.20	42.50	210.82	3.80	66.96	1.57
109	E35_Da	NovelBoundary	0	7.54	3.86	1.44	4.01	0.00	0.00	11.01
110	E35a_E36a	KnownJunction	0	0.00	1.10	35.22	205.32	3.18	76.33	0.00
111	E36_Aa	NovelBoundary	0	1.69	3.26	20.75	3.12	2.97	0.00	5.02
112	ER36a	ExonRegion	0	0.91	4.12	39.63	201.06	1.91	66.59	3.14
113	E36a_E37a	KnownJunction	0	0.00	0.00	24.10	142.63	0.88	47.52	0.00
114	ER37a	ExonRegion	0	0.00	1.41	26.51	133.21	1.92	52.14	0.03
115	E37a_E38a	KnownJunction	0	0.00	2.92	26.27	124.21	0.97	48.67	0.00
116	ER38a	ExonRegion	0	0.32	1.66	25.55	113.95	1.29	60.30	2.05
117	E38a_E39a	KnownJunction	0	0.00	1.63	32.18	130.25	0.00	63.35	0.00
118	ER39a	ExonRegion	0	1.40	2.21	33.88	182.57	3.75	71.14	1.46
119	E39a_E40a	KnownJunction	0	0.00	3.57	38.08	233.61	0.88	78.68	0.00
120	ER40a	ExonRegion	0	1.08	4.61	45.21	264.56	4.95	115.97	1.49
121	E40a_E41a	KnownJunction	0	0.00	2.55	47.18	266.31	2.90	127.00	0.72
122	ER41a	ExonRegion	0	1.68	2.36	71.38	312.88	10.57	122.74	1.28
123	E41a_E42a	KnownJunction	1	0.00	1.50	1.74	7.31	0.00	45.13	0.00
124	E41a_E43a	KnownJunction	0	0.68	3.26	147.58	401.49	19.06	101.76	0.89
125	ER42a	ExonRegion	1	0.00	2.37	1.51	7.16	0.00	57.21	0.00
126	E42a_E43a	KnownJunction	1	0.00	2.60	1.11	5.66	0.00	53.97	0.00
127	ER43a	ExonRegion	0	3.90	3.59	84.66	232.48	7.36	133.47	1.93