Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	STX4	Gene	0	88.08	119.93	105.60	277.47	78.51	471.12	114.14
2	394998	Transcript	0	5.37	9.47	9.44	20.99	2.38	61.36	6.34
3	313843	Transcript	0	68.46	84.61	71.50	147.37	47.01	257.32	63.54
4	ER1a	ExonRegion	0	0.28	1.31	2.39	1.75	0.37	22.95	0.00
5	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.66	0.00
6	E2_Aa	NovelBoundary	1	3.24	1.44	7.06	10.94	0.00	130.14	0.53
7	ER2a	ExonRegion	0	3.19	2.77	5.78	8.80	0.93	69.81	0.43
8	E2a_E4a	KnownJunction	1	0.00	0.00	2.30	8.59	0.00	50.46	0.59
9	ER3a	ExonRegion	1	41.53	29.42	25.54	56.32	16.17	94.34	15.18
10	E3a_E4a	KnownJunction	0	46.46	97.52	49.69	168.34	49.61	268.86	55.32
11	ER4a	ExonRegion	0	65.29	111.27	88.99	206.79	55.05	380.64	78.25
12	E4a_E5a	KnownJunction	0	7.63	12.56	16.14	30.91	2.88	65.23	11.09
13	E4a_E5b	KnownJunction	0	117.38	126.89	139.28	217.46	75.27	408.75	120.13
14	E4a_E8a	NovelJunction	1	1.03	1.37	0.00	8.59	0.00	38.43	0.80
15	ER5a	ExonRegion	0	15.74	20.44	17.79	50.91	5.35	91.15	17.83
16	ER5b	ExonRegion	0	129.16	170.58	160.67	328.66	100.22	584.71	159.97
17	E5_Da	NovelBoundary	0	17.98	22.23	16.61	66.32	7.63	130.33	9.04
18	E5a_E6a	KnownJunction	0	90.19	125.05	138.65	291.85	80.11	478.72	130.46
19	E5a_E7a	NovelJunction	1	1.50	4.36	10.63	19.18	0.00	44.38	1.50
20	E5a_E8a	NovelJunction	0	0.00	1.63	1.44	9.45	0.00	16.96	0.00
21	E6_Aa	NovelBoundary	0	17.07	24.09	26.37	50.09	6.41	169.32	20.88
22	ER6a	ExonRegion	0	110.67	157.01	173.10	321.33	108.88	565.84	157.08
23	E6a_E7a	KnownJunction	0	148.52	171.58	209.56	310.11	117.13	631.59	195.49
24	E6a_E8a	NovelJunction	0	4.44	8.64	4.68	37.66	0.00	50.71	0.00
25	ER7a	ExonRegion	0	171.46	194.89	244.39	400.26	149.24	782.05	222.27
26	E7a_E8a	KnownJunction	0	167.05	196.96	251.38	436.82	145.58	882.73	216.39
27	ER8a	ExonRegion	0	173.26	235.00	243.11	551.73	167.37	934.14	244.12
28	E8a_E9a	KnownJunction	0	190.47	230.69	250.23	571.38	173.13	949.17	256.85
29	E8a_E10a	NovelJunction	1	0.00	1.29	0.69	15.12	0.00	9.22	0.60
30	ER9a	ExonRegion	0	185.67	246.38	246.51	590.53	160.04	992.60	270.56
31	E9a_E10a	KnownJunction	0	194.52	263.74	240.75	616.92	149.31	1051.33	296.27
32	ER10a	ExonRegion	0	190.87	259.21	219.77	653.68	207.06	1017.51	266.75
33	E10a_E11a	KnownJunction	0	178.23	253.73	180.95	662.95	189.43	970.42	241.01
34	E11_Aa	NovelBoundary	1	76.29	2.00	68.55	12.06	0.00	10.85	2.62
35	ER11a	ExonRegion	0	175.27	245.38	174.65	614.09	161.50	948.49	251.60
36	E11_Da	NovelBoundary	0	21.68	41.27	14.72	59.84	1.08	134.99	17.00
37	E11a_E12a	KnownJunction	0	135.47	197.98	145.80	527.46	145.46	736.75	202.37
38	ER12a	ExonRegion	0	125.22	207.68	147.05	528.26	141.81	816.31	201.28
39	E12a_E13a	KnownJunction	0	113.37	172.84	114.24	477.81	123.77	731.23	157.32
40	ER13a	ExonRegion	0	60.36	102.02	65.72	248.23	46.26	443.30	72.39
41	ER13b	ExonRegion	0	10.76	29.20	21.65	45.96	7.09	128.25	14.43
42	IG4	Intergenic	0	10.04	6.14	6.17	9.07	1.80	17.30	3.57
43	IG4_SR1	SilentIntergenicRegion	0	21.86	10.95	14.74	15.68	2.52	20.68	5.05
44	IG4_SR2	SilentIntergenicRegion	0	24.74	10.25	12.99	10.62	3.74	31.06	9.14
45	IG4_AR3	ActiveIntergenicRegion	0	11.48	6.67	1.99	13.93	2.04	24.91	2.70
46	IG4_AR4	ActiveIntergenicRegion	0	16.40	15.42	10.15	21.09	2.80	42.68	6.73
47	IG4_SR5	SilentIntergenicRegion	0	10.09	5.79	9.14	10.05	2.15	17.86	4.37
48	IG4_AR5	ActiveIntergenicRegion	0	8.15	3.70	3.05	3.19	0.51	9.20	0.95