Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	POLR3E	Gene	0	74.90	138.68	154.05	160.28	166.85	116.06	91.08
2	299853	Transcript	0	98.60	156.31	243.15	180.86	250.66	167.97	111.91
3	359210	Transcript	0	4.51	8.93	3.68	8.26	12.08	8.25	5.26
4	ER1a	ExonRegion	1	20.27	32.18	30.51	35.48	17.86	33.59	12.19
5	E1a_E2a	KnownJunction	0	6.04	13.40	9.36	19.40	5.88	24.07	9.37
6	I1_AR2	ActiveIntronRegion	1	25.64	10.33	9.67	10.18	6.39	3.27	6.82
7	ER2a	ExonRegion	0	29.23	78.47	44.51	83.09	54.14	61.65	39.65
8	E2a_E3a	KnownJunction	0	69.25	161.02	88.23	157.32	178.15	126.49	85.97
9	ER3a	ExonRegion	0	95.98	170.58	153.98	206.90	170.34	146.52	112.35
10	E3a_E4a	KnownJunction	0	80.36	124.95	174.07	192.37	159.80	123.39	101.68
11	ER4a	ExonRegion	0	71.47	208.47	161.48	225.64	173.93	168.35	133.94
12	E4a_E5a	KnownJunction	0	69.41	241.20	148.23	256.99	151.73	201.72	142.10
13	ER5a	ExonRegion	0	87.58	209.13	143.23	217.00	170.49	160.86	135.57
14	E5a_E6a	KnownJunction	0	81.50	198.03	193.22	234.34	315.39	166.40	164.14
15	ER6a	ExonRegion	0	73.48	181.25	170.77	182.27	203.60	139.01	154.86
16	E6a_E7a	KnownJunction	0	72.60	125.31	129.92	131.09	169.95	97.31	118.16
17	ER7a	ExonRegion	0	65.56	134.79	112.61	118.75	126.23	91.76	99.83
18	E7a_E8a	KnownJunction	0	46.68	125.13	116.64	120.39	152.24	74.93	84.54
19	ER8a	ExonRegion	0	50.86	117.36	120.48	128.41	184.87	90.11	98.11
20	E8a_E9a	KnownJunction	0	48.08	105.01	96.87	121.23	145.09	93.10	93.61
21	ER9a	ExonRegion	0	61.53	135.04	106.28	143.22	120.75	86.99	89.11
22	E9a_E10a	KnownJunction	0	54.78	147.83	117.13	134.18	128.34	93.72	90.33
23	ER10a	ExonRegion	0	57.37	154.77	125.09	154.19	132.84	88.21	101.39
24	E10a_E11a	KnownJunction	0	58.16	150.67	103.50	162.95	178.22	71.61	92.48
25	ER11a	ExonRegion	0	56.83	160.36	116.81	154.24	156.95	84.84	85.70
26	E11a_E12a	KnownJunction	0	53.14	120.03	124.17	122.42	140.83	75.79	73.05
27	ER12a	ExonRegion	0	64.67	144.44	159.38	167.61	157.57	104.88	85.89
28	E12a_E13a	KnownJunction	0	79.64	175.36	164.71	176.36	171.05	120.73	86.79
29	ER13a	ExonRegion	0	81.68	154.22	166.21	162.38	171.74	109.19	102.54
30	E13a_E14a	KnownJunction	0	61.09	126.26	195.12	157.32	256.58	115.56	106.74
31	E13a_E15a	NovelJunction	1	1.94	1.39	2.92	16.17	0.90	4.40	0.00
32	ER14a	ExonRegion	0	68.47	134.95	166.40	174.76	183.90	109.94	92.69
33	E14a_E15a	KnownJunction	0	74.62	131.75	159.41	175.58	169.65	92.11	88.87
34	ER15a	ExonRegion	0	98.71	147.65	195.63	172.33	190.10	103.74	108.45
35	E15a_E16a	KnownJunction	0	108.23	161.86	206.40	180.83	223.43	118.94	107.93
36	ER16a	ExonRegion	0	90.45	160.90	216.20	192.10	170.05	133.87	101.97
37	E16a_E17a	KnownJunction	0	123.97	144.60	233.53	207.79	157.82	141.53	111.25
38	E16a_E18a	NovelJunction	1	0.00	2.47	0.00	2.49	0.00	13.80	0.00
39	ER17a	ExonRegion	0	98.03	112.08	196.18	183.97	169.62	108.84	82.31
40	E17a_E18a	KnownJunction	0	59.32	85.70	148.93	143.66	94.22	75.25	59.15
41	ER18a	ExonRegion	0	40.58	95.22	95.14	117.13	92.42	71.09	47.77
42	E18a_E19a	KnownJunction	0	35.20	91.35	134.25	148.00	171.47	72.63	68.42
43	E18a_E20a	NovelJunction	0	0.80	2.52	2.95	8.70	2.17	3.99	0.00
44	E18a_E21a	NovelJunction	0	2.67	10.64	2.36	7.45	1.18	2.68	1.61
45	I18	Intron	0	19.47	19.06	16.30	14.87	9.89	5.24	7.21
46	I18_AR1	ActiveIntronRegion	0	19.49	19.09	16.32	14.89	9.90	5.24	7.22
47	E19_Aa	NovelBoundary	0	21.20	31.03	20.43	10.84	20.36	4.02	9.39
48	ER19a	ExonRegion	0	68.29	113.92	205.63	137.85	246.26	107.38	94.07
49	E19_Da	NovelBoundary	0	24.02	32.00	13.55	5.91	31.51	11.87	19.33
50	E19a_E20a	KnownJunction	0	101.26	115.36	267.42	146.64	239.27	136.41	110.05
51	E19a_E21a	KnownJunction	0	4.51	8.93	3.68	8.26	12.08	8.25	5.26
52	I19	Intron	0	26.20	19.50	15.29	10.44	24.97	8.82	12.44
53	I19_AR1	ActiveIntronRegion	0	24.25	26.72	17.01	7.91	21.18	3.28	10.08
54	I19_SR1	SilentIntronRegion	0	51.04	28.55	23.74	18.02	35.91	13.32	14.76
55	I19_AR2	ActiveIntronRegion	0	33.39	25.84	17.64	12.33	27.28	9.19	11.96
56	I19_AR4	ActiveIntronRegion	0	36.80	21.51	21.39	14.36	34.87	10.24	17.83
57	E20_Aa	NovelBoundary	0	42.19	24.85	24.67	20.67	32.39	12.60	17.18
58	ER20a	ExonRegion	0	111.53	178.38	261.30	196.93	246.02	178.98	123.35
59	E20a_E21a	KnownJunction	0	83.02	175.20	200.74	199.01	266.70	188.54	102.33
60	ER21a	ExonRegion	0	135.75	172.69	242.35	223.31	308.96	193.43	121.48
61	IG40	Intergenic	0	14.30	11.03	21.36	15.03	23.69	15.32	9.71
62	IG40_AR1	ActiveIntergenicRegion	0	62.76	44.86	93.83	60.33	96.53	61.63	37.68
63	IG40_SR1	SilentIntergenicRegion	0	4.12	1.53	5.07	5.80	16.69	6.12	3.49
64	IG40_AR2	ActiveIntergenicRegion	0	4.08	5.36	5.85	9.70	12.99	6.87	6.30