Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CIITA	Gene	0	49.72	1.58	3.54	2.03	2.54	1.23	0.73
2	388910	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.33	0.00
3	388909	Transcript	0	3.94	0.00	0.39	0.00	1.70	0.00	0.00
4	381835	Transcript	0	4.50	0.00	0.02	0.42	0.00	0.00	0.00
5	324288	Transcript	0	0	0	0	0	0	0	0
6	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.66	0.00
7	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER2a	ExonRegion	0	3.43	0.00	0.41	0.00	0.00	0.00	0.00
9	E2a_E3a	KnownJunction	0	3.42	0.00	0.89	0.00	0.00	0.00	0.00
10	ER3a	ExonRegion	0	29.06	1.88	1.34	0.00	0.00	0.00	0.00
11	E3a_E4a	KnownJunction	0	51.96	0.00	4.48	0.00	0.00	0.00	0.00
12	ER4a	ExonRegion	0	72.11	2.44	6.04	0.00	0.00	0.00	0.53
13	E4a_E5a	KnownJunction	0	85.74	4.26	6.32	0.00	0.00	0.00	0.00
14	ER5a	ExonRegion	0	106.82	3.45	4.97	0.00	0.00	0.31	0.24
15	E5a_E6a	KnownJunction	0	66.54	3.70	1.98	0.00	0.00	0.00	0.00
16	E5a_E6b	KnownJunction	0	63.10	1.34	1.78	0.00	0.00	1.26	0.76
17	ER6a	ExonRegion	0	82.80	3.95	2.54	0.00	0.00	0.31	0.17
18	ER6b	ExonRegion	0	184.27	3.76	7.49	0.00	0.54	1.05	0.46
19	E6a_E7a	KnownJunction	0	195.34	0.00	7.59	2.65	1.04	0.00	0.59
20	ER7a	ExonRegion	0	172.68	1.92	10.61	0.00	0.58	1.23	0.00
21	E7a_E8a	KnownJunction	0	85.00	1.50	6.37	0.00	0.00	1.47	0.00
22	E7a_E9a	KnownJunction	0	23.15	1.23	2.16	0.00	1.15	0.00	0.00
23	ER8a	ExonRegion	0	88.21	2.09	4.58	0.00	0.46	0.83	0.00
24	E8a_E9a	KnownJunction	0	123.67	3.07	10.03	0.00	1.15	0.00	0.00
25	ER9a	ExonRegion	0	88.47	1.59	7.83	0.00	0.50	0.00	0.36
26	E9_Da	NovelBoundary	0	35.45	0.00	2.07	0.00	0.00	0.00	0.00
27	E9a_E10a	KnownJunction	0	88.07	0.00	11.24	0.00	0.00	0.00	0.00
28	ER10a	ExonRegion	0	42.97	1.65	4.15	0.00	0.00	0.00	0.36
29	E10_Da	NovelBoundary	0	26.50	1.37	2.20	0.00	0.00	0.00	0.00
30	E10a_E15a	KnownJunction	0	10.36	0.00	0.57	0.00	0.00	0.00	0.00
31	E10b_E11a	KnownJunction	0	36.18	1.21	1.34	0.00	0.00	0.00	0.00
32	ER10b	ExonRegion	0	35.42	1.21	2.13	0.00	0.00	0.00	0.00
33	ER11a	ExonRegion	0	34.82	0.26	2.76	0.00	0.00	0.00	0.00
34	E11a_E12a	KnownJunction	0	36.98	0.00	2.00	0.00	0.00	0.00	0.00
35	E11a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	ER12a	ExonRegion	0	40.41	0.89	2.03	4.30	0.03	1.52	0.12
37	E12a_E13b	KnownJunction	0	38.55	1.16	2.24	1.41	0.00	0.00	0.00
38	ER13a	ExonRegion	0	8.99	0.00	0.04	0.85	0.00	0.00	0.00
39	E13_Ab	KnownBoundary	0	15.29	1.29	0.79	1.68	0.00	0.00	0.00
40	ER13b	ExonRegion	0	50.02	1.17	2.60	1.52	0.00	0.59	0.32
41	E13a_E14a	KnownJunction	0	63.25	0.00	2.30	0.00	0.00	0.00	0.00
42	ER14a	ExonRegion	0	82.95	0.00	3.67	0.40	0.00	0.00	0.00
43	E14a_E17a	KnownJunction	0	83.05	0.00	4.45	1.46	0.00	0.00	0.00
44	E15_Aa	NovelBoundary	0	421.57	192.54	310.51	168.67	558.16	178.30	174.07
45	ER15a	ExonRegion	0	1.35	0.00	0.59	0.00	4.30	0.00	0.00
46	E15_Da	NovelBoundary	0	325.67	170.76	205.60	121.69	614.77	146.81	134.00
47	ER16a	ExonRegion	0	0.10	0.00	0.00	0.00	0.81	0.00	0.00
48	ER17a	ExonRegion	0	65.32	1.14	2.78	0.82	0.51	0.00	0.00
49	E17a_E18a	KnownJunction	0	67.44	0.00	3.61	0.00	0.00	0.00	0.00
50	ER18a	ExonRegion	0	85.21	0.00	2.80	0.99	0.00	0.00	0.00
51	E18a_E19a	KnownJunction	0	77.88	0.00	1.64	0.00	0.00	0.00	0.00
52	ER19a	ExonRegion	0	66.01	0.95	4.36	0.00	0.00	0.00	0.02
53	E19a_E20a	KnownJunction	0	54.01	2.55	6.02	0.00	0.00	0.00	0.00
54	ER20a	ExonRegion	0	63.30	1.45	3.42	1.10	0.00	0.00	0.57
55	E20a_E21a	KnownJunction	0	46.63	1.31	1.68	0.00	0.00	1.42	0.00
56	ER21a	ExonRegion	0	48.75	2.13	2.39	0.01	0.00	1.09	0.00
57	E21a_E22a	KnownJunction	0	60.18	1.29	4.27	0.00	0.00	0.00	0.00
58	ER22a	ExonRegion	0	75.51	1.67	5.63	0.00	0.12	0.00	0.61
59	E22a_E23a	KnownJunction	0	48.55	0.00	1.39	0.00	1.04	0.00	0.62
60	ER23a	ExonRegion	0	52.68	3.39	6.35	2.34	11.12	2.74	2.84
61	IG28	Intergenic	0	29.02	0.80	2.52	0.93	0.54	0.91	0.61
62	IG28_AR1	ActiveIntergenicRegion	0	40.57	1.40	2.72	0.54	0.55	1.41	0.37
63	IG28_SR2	SilentIntergenicRegion	0	28.52	0.66	3.02	1.28	0.40	0.98	0.52
64	IG28_AR2	ActiveIntergenicRegion	0	39.83	0.92	4.25	2.36	1.31	0.65	1.46
65	IG28_SR4	SilentIntergenicRegion	0	17.09	0.63	1.13	0.00	0.28	0.63	0.68