Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CLEC16A	Gene	0	55.35	65.09	70.53	134.31	39.38	44.78	70.46
2	409790	Transcript	0	1.72	6.51	1.71	7.64	0.51	0.72	1.54
3	409552	Transcript	0	66.02	68.50	77.77	118.29	53.65	35.43	69.88
4	261657	Transcript	0	12.13	11.28	15.10	21.47	8.62	5.34	10.26
5	381822	Transcript	1	10.79	7.57	3.19	22.63	12.13	7.65	22.95
6	ER1a	ExonRegion	0	1.06	0.94	1.05	1.35	0.39	0.53	0.62
7	E1_Ab	KnownBoundary	0	0.00	0.00	1.52	0.00	0.00	0.00	0.00
8	E1_Ac	KnownBoundary	0	13.79	13.53	7.10	15.17	4.54	4.74	7.07
9	ER1b	ExonRegion	1	17.87	19.13	13.21	33.04	9.31	7.66	10.46
10	ER1c	ExonRegion	0	15.47	44.66	20.34	67.66	9.32	15.17	18.00
11	E1a_E2a	KnownJunction	0	63.51	100.04	66.42	172.57	25.68	48.43	64.13
12	ER2a	ExonRegion	0	54.62	124.65	72.10	175.81	37.87	63.35	68.98
13	E2a_E3a	KnownJunction	0	60.17	136.53	89.01	193.65	43.41	82.76	62.03
14	ER3a	ExonRegion	0	172.61	173.16	205.06	238.39	89.23	112.11	131.36
15	E3a_E4a	KnownJunction	1	170.62	151.27	236.33	247.26	66.97	120.81	115.41
16	ER4a	ExonRegion	0	219.60	179.42	273.46	263.45	100.16	109.85	164.49
17	E4a_E5a	KnownJunction	0	158.59	129.47	246.68	253.11	107.70	83.51	146.42
18	ER5a	ExonRegion	0	163.37	125.82	201.29	246.24	115.05	73.85	136.06
19	E5a_E6a	KnownJunction	0	0.88	5.99	1.18	7.61	0.00	0.00	2.42
20	E5a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	E5a_E7b	KnownJunction	0	172.56	133.54	204.42	271.34	126.15	71.80	141.24
22	E6a_E7b	KnownJunction	1	1.74	10.25	0.57	9.48	0.00	0.00	0.00
23	ER6a	ExonRegion	1	4.35	15.39	2.71	16.83	1.62	0.41	3.15
24	ER7a	ExonRegion	0	24.26	22.56	30.19	42.93	17.24	10.68	20.53
25	ER7b	ExonRegion	0	134.41	172.94	155.91	265.95	94.73	84.50	164.97
26	E7a_E8a	KnownJunction	0	113.78	177.12	116.34	225.07	79.88	72.81	117.47
27	E7a_E9a	NovelJunction	0	6.51	4.07	10.66	11.32	2.28	1.34	2.57
28	ER8a	ExonRegion	0	92.87	160.42	122.14	206.11	85.40	72.72	143.65
29	E8a_E9a	KnownJunction	0	67.78	155.42	89.53	137.84	42.62	70.40	101.18
30	ER9a	ExonRegion	0	60.82	140.45	102.60	153.31	44.53	70.11	105.56
31	E9a_E10a	KnownJunction	0	59.23	103.96	107.68	135.40	42.30	60.84	97.15
32	ER10a	ExonRegion	0	62.06	130.95	117.47	172.70	48.28	58.33	106.02
33	E10a_E11a	KnownJunction	0	63.79	98.47	105.88	152.01	74.39	55.82	104.83
34	E10a_E12a	NovelJunction	0	0.00	6.75	2.24	11.08	0.00	4.96	0.75
35	ER11a	ExonRegion	0	60.01	106.23	77.88	164.22	40.88	49.31	80.98
36	E11_Da	KnownBoundary	0	23.75	46.76	42.02	70.76	7.35	24.95	18.76
37	E11a_E12a	KnownJunction	1	22.97	59.14	24.95	72.66	32.87	26.13	64.32
38	ER11b	ExonRegion	1	24.27	38.07	43.00	65.93	4.20	17.57	11.26
39	E11b_E12a	KnownJunction	1	22.21	36.94	41.83	59.60	5.39	14.10	5.49
40	I11_AR4	ActiveIntronRegion	0	8.58	16.58	13.01	13.84	4.49	5.63	10.57
41	ER12a	ExonRegion	0	128.35	118.33	99.33	191.34	68.80	54.13	104.70
42	E12a_E13a	KnownJunction	1	184.04	127.50	137.12	226.02	47.83	83.13	116.33
43	ER13a	ExonRegion	0	118.50	128.68	97.87	239.44	57.59	69.70	111.03
44	E13a_E14a	KnownJunction	0	135.71	119.61	123.14	242.90	60.56	75.58	113.63
45	ER14a	ExonRegion	0	163.40	133.67	113.30	221.72	89.08	68.45	117.23
46	E14a_E15a	KnownJunction	0	103.98	91.14	78.09	164.98	43.94	57.03	74.21
47	ER15a	ExonRegion	0	90.12	121.32	98.01	202.76	63.87	64.41	98.80
48	E15a_E16a	KnownJunction	0	75.99	112.57	77.63	201.83	40.87	52.26	98.03
49	ER16a	ExonRegion	0	96.72	137.44	102.09	230.08	43.03	68.71	102.37
50	E16a_E17a	KnownJunction	0	92.50	118.77	97.39	190.91	53.87	69.25	81.85
51	ER17a	ExonRegion	0	105.13	130.44	123.48	223.21	53.12	72.67	109.80
52	E17a_E18a	KnownJunction	0	79.61	104.90	108.14	193.97	58.25	52.63	96.95
53	E17a_E19a	NovelJunction	1	0.00	9.14	0.86	0.00	0.85	1.23	0.00
54	ER18a	ExonRegion	0	52.41	69.27	67.54	152.40	49.06	36.16	78.12
55	E18a_E19a	KnownJunction	0	35.00	36.25	59.39	106.98	25.93	26.77	51.08
56	ER19a	ExonRegion	0	43.90	67.90	67.28	158.64	43.99	36.16	103.93
57	E19a_E20a	KnownJunction	1	51.64	86.09	88.51	216.16	58.53	56.92	144.03
58	ER20a	ExonRegion	0	57.45	105.25	84.00	219.98	57.05	59.19	145.91
59	E20a_E21a	KnownJunction	1	60.22	123.66	95.29	238.81	61.27	79.86	182.95
60	E21_Aa	NovelBoundary	1	23.93	0.00	38.81	4.25	0.00	1.02	0.66
61	ER21a	ExonRegion	1	49.28	104.66	82.88	219.59	48.86	62.29	135.90
62	E21a_E22a	KnownJunction	0	71.32	94.63	84.34	224.75	77.00	56.07	133.33
63	ER22a	ExonRegion	0	39.73	76.02	65.47	167.05	49.85	47.81	84.27
64	E22_Ab	KnownBoundary	1	22.10	56.98	41.90	101.05	30.61	39.53	82.55
65	ER22b	ExonRegion	0	35.84	53.84	52.28	123.27	26.93	47.11	72.42
66	E22_Da	KnownBoundary	0	5.61	26.17	5.03	11.38	1.06	14.71	6.58
67	E22a_E23a	KnownJunction	0	45.53	39.01	61.52	122.15	23.65	39.85	69.13
68	ER22c	ExonRegion	0	2.55	12.82	3.95	10.88	1.92	8.38	4.09
69	E22_Db	NovelBoundary	0	10.60	14.37	11.53	8.86	2.19	16.16	2.36
70	I22_AR1	ActiveIntronRegion	0	7.20	18.46	9.28	12.45	2.05	7.83	5.70
71	ER23a	ExonRegion	0	30.01	36.22	31.81	91.07	29.69	29.62	53.40
72	E23_Da	NovelBoundary	1	19.39	18.44	13.95	18.23	4.22	6.27	5.33
73	E23a_E24a	KnownJunction	1	4.31	2.94	1.62	14.33	9.45	3.00	12.24
74	E23a_E25a	KnownJunction	0	31.03	19.83	35.60	72.17	29.95	26.40	53.91
75	I23_AR1	ActiveIntronRegion	0	8.16	13.54	9.65	17.09	4.16	6.65	6.93
76	I23_AR2	ActiveIntronRegion	0	8.08	13.51	10.14	22.26	3.65	5.47	5.67
77	I23_AR3	ActiveIntronRegion	0	8.78	15.35	8.96	20.11	3.54	5.42	3.40
78	I23_SR3	SilentIntronRegion	0	15.07	9.10	13.49	20.06	6.50	6.72	7.72
79	I23_AR4	ActiveIntronRegion	0	15.00	7.87	11.53	17.97	4.58	7.26	5.60
80	ER24a	ExonRegion	1	8.32	9.97	3.53	23.78	9.29	10.74	20.99
81	E24a_E25a	KnownJunction	1	19.74	9.80	4.43	29.77	17.66	9.22	35.63
82	I24_AR1	ActiveIntronRegion	0	14.68	8.48	14.12	12.89	5.52	4.19	6.45
83	E25_Aa	NovelBoundary	1	28.96	6.02	15.12	8.80	9.41	4.61	4.40
84	ER25a	ExonRegion	0	38.55	36.68	54.20	109.89	29.97	38.01	52.58
85	ER25b	ExonRegion	0	0.58	0.00	3.01	2.93	0.53	2.64	1.52
86	IG30_AR5	ActiveIntergenicRegion	0	0.77	3.50	0.68	7.19	0.00	9.81	1.55
87	IG30_AR6	ActiveIntergenicRegion	0	0.56	2.10	0.54	12.92	0.00	7.97	1.44
88	IG30_AR7	ActiveIntergenicRegion	0	1.89	3.58	2.81	14.89	0.05	14.00	1.84
89	IG30_SR6	SilentIntergenicRegion	0	4.70	3.86	9.40	21.31	0.67	27.01	1.17
90	IG30_AR8	ActiveIntergenicRegion	0	1.35	4.20	4.69	24.73	0.00	16.18	1.01
91	IG30_SR8	SilentIntergenicRegion	0	0.73	2.53	0.41	3.18	0.05	13.50	0.20