Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	LYSMD4	Gene	0	7.88	9.78	10.54	11.01	33.49	6.63	23.15
2	332728	Transcript	0	0	0	0	0	0	0	0
3	344791	Transcript	0	0.68	0.00	0.40	0.00	1.15	0.00	0.48
4	409796	Transcript	0	0.26	0.50	0.24	1.15	1.27	0.00	1.04
5	ER1a	ExonRegion	0	0.28	0.00	0.00	0.00	3.05	0.00	0.00
6	E1a_E3a	KnownJunction	0	0.85	0.00	0.00	0.00	2.05	0.00	0.00
7	E1a_E4a	NovelJunction	0	4.54	0.00	0.73	8.02	6.99	2.55	6.42
8	ER2a	ExonRegion	0	0.00	0.31	0.00	0.84	1.93	0.00	0.75
9	E2a_E4a	KnownJunction	0	0.00	1.18	0.73	1.68	1.08	0.00	0.00
10	ER3a	ExonRegion	0	0.20	0.98	0.02	0.00	1.39	0.00	0.08
11	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	Ix	Intron	0	3.58	3.03	3.43	2.28	5.00	1.63	7.45
13	Ix_AR1	ActiveIntronRegion	0	5.17	2.23	4.91	3.60	6.31	0.95	10.12
14	E4_Aa	NovelBoundary	0	2.62	0.00	4.53	4.44	9.31	0.00	12.58
15	ER4a	ExonRegion	0	5.23	7.13	5.62	10.68	15.16	7.99	17.54
16	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	E4a_E7a	KnownJunction	0	3.17	11.19	5.56	10.97	7.33	11.12	17.14
18	Ix	Intron	0	3.35	4.07	5.44	2.57	3.91	0.95	7.61
19	Ix_AR1	ActiveIntronRegion	0	3.37	4.09	5.47	2.59	3.93	0.95	7.65
20	E5_Aa	NovelBoundary	0	7.39	2.94	8.39	3.36	11.80	2.73	19.15
21	ER5a	ExonRegion	0	0.74	0.00	0.53	0.00	3.16	0.00	0.00
22	E5_Da	NovelBoundary	0	8.33	0.00	11.74	0.00	4.01	1.37	6.41
23	E5a_E6a	KnownJunction	0	1.59	0.00	0.00	0.00	0.00	0.00	0.00
24	Ix	Intron	0	4.96	2.89	6.13	1.19	9.59	1.17	10.63
25	Ix_AR1	ActiveIntronRegion	0	5.01	2.92	6.20	1.21	9.71	1.19	10.76
26	ER6a	ExonRegion	0	0.38	0.00	1.07	0.00	1.43	0.00	1.92
27	Ix	Intron	0	6.18	2.43	8.89	2.75	11.46	1.10	11.42
28	Ix_AR2	ActiveIntronRegion	0	4.96	2.50	7.61	2.70	11.03	0.64	12.25
29	Ix_SR1	SilentIntronRegion	0	8.92	2.95	12.57	3.70	12.59	1.59	10.10
30	Ix_AR1	ActiveIntronRegion	0	10.02	1.31	11.81	1.83	12.73	3.29	8.29
31	E7_Aa	NovelBoundary	0	9.26	2.73	9.77	2.52	10.74	3.32	10.40
32	ER7a	ExonRegion	0	9.27	11.43	12.62	12.58	40.17	7.40	27.06
33	ER7b	ExonRegion	0	0.77	0.00	0.00	0.94	0.81	0.00	2.36