Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MEF2A	Gene	0	94.42	181.75	161.32	246.13	52.22	246.35	146.71
2	346108	Transcript	0	0	0	0	0	0	0	0
3	338042	Transcript	0	108.99	258.52	214.37	306.25	75.36	322.25	192.38
4	354410	Transcript	0	72.90	348.25	168.42	503.62	55.17	454.47	214.80
5	IG28_AR1	ActiveIntergenicRegion	0	6.50	1.05	4.86	1.49	8.58	0.00	4.39
6	IG28_SR1	SilentIntergenicRegion	0	7.48	0.70	4.81	1.55	11.09	0.04	8.84
7	IG28_AR3	ActiveIntergenicRegion	0	4.76	0.79	3.48	0.68	7.54	0.37	4.92
8	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	E1_Da	NovelBoundary	1	62.79	49.97	51.22	82.47	23.95	52.77	23.13
10	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER2a	ExonRegion	1	79.14	77.89	88.29	104.07	14.26	112.94	47.75
12	E2a_E3a	KnownJunction	1	133.62	128.60	149.02	168.51	30.43	157.80	86.92
13	ER3a	ExonRegion	0	168.60	338.88	261.28	326.86	77.34	376.52	154.46
14	E3a_E4a	KnownJunction	0	148.66	424.15	262.16	414.85	44.42	510.72	181.62
15	E3a_E5a	NovelJunction	1	2.85	16.58	10.43	6.72	0.00	0.00	0.56
16	ER4a	ExonRegion	0	193.45	452.10	335.76	474.27	97.59	505.80	253.93
17	E4a_E5a	KnownJunction	0	109.45	276.17	216.73	304.23	68.31	350.27	175.66
18	E4a_E6a	KnownJunction	0	52.94	106.01	79.12	112.67	33.03	112.24	60.29
19	I4_SR1	SilentIntronRegion	0	26.46	23.59	15.37	17.80	4.16	9.08	15.59
20	I4_AR3	ActiveIntronRegion	1	23.60	21.00	10.74	17.64	3.24	12.26	13.49
21	I4_AR11	ActiveIntronRegion	0	19.26	8.37	9.68	4.13	4.29	5.03	19.88
22	ER5a	ExonRegion	0	127.33	278.98	236.95	333.06	86.16	359.98	220.61
23	E5_Da	NovelBoundary	0	32.23	35.68	36.46	36.55	2.90	37.98	20.12
24	E5a_E7a	KnownJunction	0	90.18	220.42	189.42	281.45	71.63	256.50	180.86
25	E6_Aa	NovelBoundary	0	30.83	49.36	36.96	42.15	9.27	30.87	23.47
26	ER6a	ExonRegion	0	92.78	142.12	141.80	140.26	34.22	136.18	79.71
27	E6a_E7a	KnownJunction	0	88.77	145.68	131.17	130.50	36.33	156.30	103.60
28	ER7a	ExonRegion	0	148.82	423.15	294.18	462.97	111.40	429.54	276.11
29	E7a_E8a	KnownJunction	0	122.37	496.35	263.72	469.06	145.39	452.89	292.05
30	ER8a	ExonRegion	0	127.46	413.68	272.15	463.04	115.39	420.88	284.73
31	E8a_E9a	KnownJunction	0	115.58	302.70	249.70	415.20	86.26	388.94	242.70
32	E8a_E12a	NovelJunction	0	1.97	7.62	3.88	14.41	1.18	8.15	0.00
33	ER9a	ExonRegion	0	115.02	377.36	259.32	504.11	93.59	439.34	312.34
34	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	E9a_E12a	KnownJunction	0	72.90	348.25	168.42	503.62	55.17	454.47	214.80
36	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER10a	ExonRegion	0	0.00	0.00	0.09	0.00	0.11	0.00	0.00
38	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER11a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	I11_SR3	SilentIntronRegion	0	21.20	7.91	10.51	5.95	4.41	2.70	13.43
41	E12_Aa	NovelBoundary	1	25.84	12.95	10.23	2.11	0.00	0.00	11.24
42	ER12a	ExonRegion	0	93.52	393.68	195.36	489.66	73.43	457.12	275.91
43	E12a_E13a	KnownJunction	0	118.10	398.62	209.81	546.40	72.64	484.83	277.66
44	E12a_E14a	NovelJunction	1	0.00	0.00	3.39	14.71	1.18	26.32	2.51
45	ER13a	ExonRegion	0	101.42	356.04	160.60	446.36	56.36	430.21	246.52
46	E13a_E14a	KnownJunction	0	72.18	321.61	126.92	412.76	48.64	422.66	211.80
47	ER14a	ExonRegion	0	81.86	125.38	135.17	196.88	42.86	199.26	120.92