Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	IL16	Gene	0	2.28	2.51	9.22	10.96	3.05	28.89	4.44
2	394655	Transcript	0	0	0	0	0	0	0	0
3	355368	Transcript	0	0.23	0.00	0.17	0.02	0.00	0.48	0.00
4	394656	Transcript	0	0	0	0	0	0	0	0
5	360547	Transcript	0	0	0	0	0	0	0	0
6	394660	Transcript	0	0.27	0.38	2.19	2.57	0.27	6.60	0.58
7	329842	Transcript	0	0.22	0.83	1.14	4.30	0.01	15.88	0.01
8	302987	Transcript	0	0	0	0	0	0	0	0
9	394653	Transcript	0	0.00	0.00	0.00	0.52	0.00	3.56	0.00
10	394652	Transcript	0	0.00	0.00	0.00	0.31	0.00	1.23	0.00
11	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER1b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	E1b_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER1c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	ER3a	ExonRegion	0	0.91	0.91	2.81	7.13	0.00	22.50	0.00
18	E3_Ab	KnownBoundary	0	0.63	0.00	3.78	11.73	0.00	50.33	0.00
19	ER3b	ExonRegion	0	0.83	0.30	7.05	6.37	0.00	33.64	0.00
20	E3a_E4a	KnownJunction	0	0.00	0.00	5.32	5.04	0.00	13.37	0.00
21	ER4a	ExonRegion	0	1.07	0.00	5.52	3.50	0.00	20.03	0.14
22	E4a_E5a	KnownJunction	1	0.00	0.00	8.08	3.01	0.00	24.17	0.76
23	ER5a	ExonRegion	0	0.78	0.65	4.34	6.64	0.00	17.49	0.61
24	E5a_E6a	KnownJunction	0	1.40	0.00	5.20	1.35	0.00	13.19	0.00
25	ER6a	ExonRegion	0	1.09	0.00	3.12	3.26	0.37	20.15	0.46
26	E6a_E7a	KnownJunction	0	0.00	0.00	3.66	6.88	0.00	25.67	0.00
27	ER7a	ExonRegion	0	0.16	0.00	4.46	6.47	0.19	26.73	0.56
28	E7_Da	NovelBoundary	0	0.00	0.00	0.00	2.82	0.00	9.46	0.00
29	E7a_E8a	KnownJunction	1	1.57	0.00	2.83	6.96	1.18	41.11	0.73
30	ER8a	ExonRegion	0	0.51	0.00	5.71	5.78	0.26	31.86	0.51
31	E8_Da	NovelBoundary	0	0.00	0.00	0.72	1.35	0.00	10.77	0.00
32	E8a_E9a	KnownJunction	0	0.00	0.00	4.37	7.88	0.00	24.47	0.00
33	ER9a	ExonRegion	0	0.39	0.00	4.27	7.80	0.00	27.20	0.34
34	E9a_E10a	KnownJunction	0	1.03	0.00	1.34	5.88	0.00	26.59	1.38
35	ER10a	ExonRegion	1	0.86	0.00	4.27	5.47	0.00	34.76	1.09
36	E10a_E11a	KnownJunction	0	0.78	0.00	3.41	6.80	0.00	27.42	0.00
37	ER11a	ExonRegion	1	1.11	0.02	4.12	8.59	0.00	48.18	1.06
38	E11_Da	NovelBoundary	0	0.00	0.00	0.00	2.19	0.00	9.41	0.00
39	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	2.76	0.00	9.97	0.00
40	E11a_E13a	KnownJunction	0	1.72	0.00	4.14	2.71	0.00	15.01	1.68
41	ER12a	ExonRegion	0	0.00	2.21	0.68	2.83	0.00	18.20	0.00
42	E12_Da	KnownBoundary	1	0.00	3.15	1.37	2.76	0.00	23.58	0.00
43	ER12b	ExonRegion	0	0.00	1.85	1.19	7.77	0.00	18.30	0.00
44	E12b_E13a	KnownJunction	1	0.00	0.00	0.00	1.68	0.00	23.05	0.00
45	ER13a	ExonRegion	0	1.09	0.88	6.22	8.59	0.00	38.86	0.73
46	E13a_E14a	KnownJunction	0	0.63	0.00	3.19	2.47	0.00	6.81	0.00
47	E13a_E14b	KnownJunction	0	0.58	1.13	3.54	4.77	0.00	28.70	0.00
48	E14_Aa	NovelBoundary	0	1.03	0.00	0.73	3.77	0.00	25.83	0.00
49	ER14a	ExonRegion	0	0.48	2.32	1.33	9.60	0.07	31.26	0.06
50	E14_Ab	KnownBoundary	0	0.00	4.60	1.62	22.27	0.00	52.82	0.72
51	ER14b	ExonRegion	1	0.15	1.96	3.99	10.68	0.00	57.93	0.18
52	E14_Da	KnownBoundary	0	0.00	4.81	2.44	8.99	0.00	32.62	0.00
53	E14a_E16c	KnownJunction	0	0.70	0.00	0.00	0.00	0.00	1.45	0.00
54	ER14c	ExonRegion	0	0.00	2.28	2.00	10.25	0.00	35.61	0.00
55	E14_Db	KnownBoundary	0	0.00	1.02	2.43	12.38	0.00	29.32	0.00
56	ER14d	ExonRegion	1	1.20	1.59	2.48	4.95	0.43	34.11	1.06
57	E14_Dc	NovelBoundary	0	0.68	0.00	0.57	11.95	0.00	14.55	0.00
58	E14c_E16c	KnownJunction	1	0.00	1.42	1.71	1.30	0.00	16.03	1.18
59	I14	Intron	0	0.44	0.67	0.89	4.89	0.08	11.50	0.16
60	I14_AR1	ActiveIntronRegion	0	0.72	1.04	1.46	5.83	0.13	9.92	0.00
61	I14_AR2	ActiveIntronRegion	0	0.46	1.40	0.29	5.00	0.00	10.11	0.00
62	I14_SR2	SilentIntronRegion	0	0.40	0.32	1.07	5.27	0.10	14.42	0.31
63	E15_Aa	NovelBoundary	0	4.29	0.00	3.38	7.07	0.00	12.19	2.09
64	ER15a	ExonRegion	0	0.00	0.00	0.00	1.04	0.00	7.11	0.00
65	E15_Da	NovelBoundary	0	1.57	1.37	3.33	4.36	0.00	18.09	0.00
66	E15a_E16b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
67	I15	Intron	0	1.66	1.90	2.69	11.12	0.53	22.25	1.93
68	I15_SR1	SilentIntronRegion	0	1.65	2.17	2.60	3.11	0.22	9.08	0.14
69	I15_AR1	ActiveIntronRegion	0	1.96	2.35	4.32	13.47	1.02	24.66	1.66
70	I15_SR2	SilentIntronRegion	0	1.52	1.66	2.88	13.69	0.96	20.27	1.60
71	I15_AR2	ActiveIntronRegion	0	2.35	1.90	3.13	11.98	0.45	20.77	2.08
72	I15_SR3	SilentIntronRegion	0	0.90	1.71	1.70	10.98	0.46	25.88	2.29
73	E16_Aa	NovelBoundary	0	0.62	1.13	0.00	6.42	0.00	19.43	0.53
74	E16_Ac	NovelBoundary	0	0.00	2.99	0.00	4.04	0.00	12.46	0.00
75	ER16a	ExonRegion	0	0.00	0.00	0.00	0.31	0.00	1.23	0.00
76	ER16b	ExonRegion	0	0.06	0.20	0.11	2.70	0.00	3.17	0.11
77	ER16c	ExonRegion	0	1.08	2.19	3.38	8.96	0.00	41.05	1.19
78	E16_Da	NovelBoundary	0	1.03	1.63	1.49	7.56	0.00	15.33	0.75
79	E16a_E17a	KnownJunction	0	1.49	1.44	6.19	8.29	0.00	29.83	1.39
80	I16	Intron	0	1.36	2.27	3.15	8.75	0.40	15.15	2.33
81	I16_AR1	ActiveIntronRegion	0	1.74	1.43	3.47	6.81	0.48	19.20	2.87
82	I16_SR2	SilentIntronRegion	0	1.41	3.61	4.01	11.37	0.58	16.36	2.76
83	I16_AR3	ActiveIntronRegion	0	1.48	6.60	3.88	12.49	1.01	17.95	2.23
84	I16_SR3	SilentIntronRegion	0	1.03	1.87	2.71	9.07	0.20	12.31	2.08
85	E17_Aa	NovelBoundary	0	2.74	3.26	2.20	12.95	0.00	22.38	0.87
86	ER17a	ExonRegion	0	1.22	1.74	5.94	14.23	0.08	49.95	1.65
87	E17a_E18a	KnownJunction	1	0.77	0.00	2.50	1.68	0.00	41.70	0.64
88	I17	Intron	0	0.76	1.39	1.40	4.91	0.18	9.02	2.32
89	I17_SR1	SilentIntronRegion	0	0.83	1.52	1.53	5.36	0.19	9.85	2.53
90	E18_Aa	NovelBoundary	0	1.82	10.59	5.69	11.19	0.00	23.40	6.21
91	ER18a	ExonRegion	0	2.73	4.36	9.00	14.11	0.00	56.16	4.59
92	E18_Da	NovelBoundary	0	3.71	0.00	5.10	8.13	0.99	27.68	10.18
93	E18a_E19a	KnownJunction	1	0.72	0.00	3.58	4.71	0.00	67.51	0.00
94	I18	Intron	0	2.62	5.00	4.26	13.58	0.53	21.94	8.93
95	I18_AR1	ActiveIntronRegion	0	3.18	7.05	4.23	16.52	0.69	26.02	10.61
96	I18_SR1	SilentIntronRegion	0	2.38	3.80	4.85	12.81	0.47	20.58	8.56
97	E19_Aa	NovelBoundary	0	0.00	2.86	1.39	9.18	1.06	31.03	6.74
98	ER19a	ExonRegion	0	0.49	1.80	4.63	13.45	1.21	50.13	1.66
99	E19a_E20a	KnownJunction	1	0.00	0.00	5.68	2.71	0.00	45.16	0.79
100	I19_AR4	ActiveIntronRegion	0	0.00	4.51	0.97	3.47	0.00	10.16	1.59
101	I19_AR5	ActiveIntronRegion	0	0.41	1.72	0.83	3.43	0.00	8.19	1.42
102	E20_Aa	NovelBoundary	0	0.00	0.00	2.08	10.08	0.00	12.09	2.06
103	ER20a	ExonRegion	0	0.98	0.00	5.72	15.18	0.16	52.24	2.09
104	E20a_E21a	KnownJunction	0	1.03	0.00	1.85	6.69	0.00	32.88	0.00
105	E20a_E21b	KnownJunction	0	0.00	0.00	2.24	5.53	0.00	15.41	0.00
106	ER21a	ExonRegion	0	0.77	0.00	2.54	7.79	0.00	41.07	0.00
107	ER21b	ExonRegion	0	0.25	0.00	4.88	13.09	0.00	53.71	0.09
108	E21a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
109	E21a_E23a	KnownJunction	1	0.00	0.00	6.44	8.29	0.00	51.19	0.69
110	E22_Aa	NovelBoundary	0	0.00	2.68	0.88	3.31	0.00	8.82	2.39
111	ER22a	ExonRegion	0	0.00	0.00	0.51	0.06	0.00	0.00	0.00
112	ER23a	ExonRegion	0	1.04	0.00	7.61	16.09	0.21	59.58	1.00
113	E23_Da	KnownBoundary	0	1.02	0.00	9.77	14.60	0.00	48.24	0.00
114	ER23b	ExonRegion	0	0.60	0.00	3.73	8.20	0.39	29.76	1.25
115	E23_Db	KnownBoundary	0	1.03	0.00	7.63	4.14	4.31	11.28	1.56
116	ER23c	ExonRegion	0	5.12	5.18	18.60	16.39	8.38	25.08	10.88
117	E23_Dc	KnownBoundary	0	6.88	5.83	21.27	10.02	3.20	12.57	5.79
118	ER23d	ExonRegion	0	0.81	1.14	4.32	2.18	0.80	4.38	1.75