Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	FANCI	Gene	0	11.69	4.16	8.47	2.27	339.56	3.09	31.20
2	300027	Transcript	0	5.46	1.30	3.15	0.83	82.09	1.19	5.17
3	310775	Transcript	0	11.50	4.64	12.39	2.28	406.91	1.20	37.76
4	ER1a	ExonRegion	0	1.28	0.00	0.87	0.00	34.65	0.00	1.59
5	E1a_E2a	KnownJunction	0	9.95	0.00	3.92	0.00	319.65	0.00	6.75
6	ER1b	ExonRegion	0	7.60	0.00	2.94	0.00	239.58	0.00	4.98
7	ER2a	ExonRegion	0	11.35	3.68	4.33	1.07	146.07	0.50	12.70
8	E2a_E3a	KnownJunction	0	10.75	5.54	3.31	3.36	84.24	1.66	20.39
9	ER3a	ExonRegion	0	16.30	3.63	7.13	2.39	297.13	0.65	28.70
10	E3a_E4a	KnownJunction	0	12.07	4.33	8.72	0.00	548.75	0.00	24.41
11	ER4a	ExonRegion	0	8.48	2.11	6.46	2.98	345.80	1.26	27.24
12	E4a_E5a	KnownJunction	0	11.03	0.00	6.98	1.08	252.43	1.55	28.29
13	ER5a	ExonRegion	0	9.96	5.45	9.75	1.97	334.99	3.12	32.69
14	E5a_E6a	KnownJunction	0	14.55	8.64	8.62	1.63	453.82	4.23	32.06
15	ER6a	ExonRegion	0	9.70	7.18	9.92	1.01	439.96	1.78	39.53
16	E6a_E7a	KnownJunction	1	5.47	4.15	7.21	0.00	407.18	0.00	34.34
17	ER7a	ExonRegion	0	9.02	6.51	9.60	0.00	427.08	1.23	42.56
18	E7a_E8a	KnownJunction	0	9.10	5.39	9.46	0.00	442.55	1.34	35.17
19	ER8a	ExonRegion	0	15.18	6.75	10.25	2.34	534.62	3.57	42.44
20	E8a_E9a	KnownJunction	0	13.25	1.21	6.32	2.25	449.44	3.75	46.62
21	E9_Aa	NovelBoundary	0	1.80	8.28	0.00	2.76	0.00	1.66	0.00
22	ER9a	ExonRegion	0	13.34	4.76	6.66	1.09	451.78	4.65	52.08
23	E9a_E10a	KnownJunction	1	7.19	2.26	1.51	0.00	408.36	0.00	44.93
24	ER10a	ExonRegion	1	7.68	4.46	5.22	2.93	365.05	3.85	44.85
25	E10a_E11a	KnownJunction	0	9.45	2.60	4.70	0.00	388.72	2.87	42.48
26	ER11a	ExonRegion	1	4.61	3.32	7.65	0.03	323.37	3.22	38.13
27	E11a_E12a	KnownJunction	1	3.55	2.50	11.48	0.00	288.97	6.46	23.92
28	ER12a	ExonRegion	0	6.67	2.83	8.14	1.40	283.83	5.41	30.34
29	E12_Da	NovelBoundary	0	1.44	6.99	0.66	9.92	0.88	2.71	0.00
30	E12a_E13a	KnownJunction	1	3.86	0.00	8.32	0.00	290.83	5.65	26.38
31	E13_Aa	NovelBoundary	0	3.64	7.54	0.00	1.54	0.00	4.48	1.29
32	ER13a	ExonRegion	0	9.57	3.87	11.40	2.42	277.90	6.83	31.23
33	E13a_E14a	KnownJunction	0	5.84	1.63	6.29	1.57	211.44	2.71	34.48
34	ER14a	ExonRegion	0	10.16	2.80	9.07	1.46	305.93	2.88	30.37
35	E14a_E15a	KnownJunction	0	10.23	4.60	9.14	0.00	326.08	4.10	28.72
36	ER15a	ExonRegion	0	10.63	5.16	9.51	0.72	316.10	3.23	32.90
37	E15a_E16a	KnownJunction	0	11.78	7.28	13.57	0.00	275.97	1.13	38.78
38	ER16a	ExonRegion	0	10.16	4.04	10.61	0.00	364.54	1.12	31.87
39	E16_Da	NovelBoundary	0	11.15	4.33	1.70	2.84	21.07	2.73	4.53
40	E16a_E17a	KnownJunction	0	8.38	1.26	4.57	0.00	372.56	0.00	25.07
41	I16_AR2	ActiveIntronRegion	0	10.28	3.83	3.42	1.24	38.59	1.70	4.38
42	I16_AR3	ActiveIntronRegion	0	11.02	5.46	4.19	3.31	48.36	3.10	2.34
43	ER17a	ExonRegion	0	8.39	0.98	6.73	0.00	354.38	0.79	33.84
44	E17a_E18a	KnownJunction	0	8.11	0.00	4.87	0.00	344.78	0.00	38.31
45	ER18a	ExonRegion	0	10.76	3.04	4.55	0.00	341.77	1.65	37.59
46	E18a_E19a	KnownJunction	0	7.44	2.99	5.29	0.00	354.85	1.21	33.95
47	ER19a	ExonRegion	1	7.17	4.47	5.42	3.00	320.06	1.74	42.71
48	E19_Da	NovelBoundary	0	10.06	4.47	3.77	4.23	1.15	2.65	3.63
49	E19a_E20a	KnownJunction	1	6.49	1.55	5.52	3.03	346.07	1.66	39.41
50	ER20a	ExonRegion	0	6.67	0.89	5.84	3.63	294.57	2.69	31.51
51	E20a_E21a	KnownJunction	0	5.26	1.63	5.10	1.14	311.77	1.66	27.43
52	E21_Aa	NovelBoundary	0	15.54	9.77	4.96	2.74	0.00	4.10	5.19
53	ER21a	ExonRegion	0	8.35	6.12	7.20	2.90	257.61	2.94	30.54
54	E21_Da	NovelBoundary	0	8.28	8.80	4.73	0.00	3.11	5.33	4.67
55	E21a_E22a	KnownJunction	0	5.62	3.05	10.06	1.68	283.90	0.00	21.74
56	E22_Aa	NovelBoundary	0	16.39	7.25	2.86	4.66	12.06	3.14	7.80
57	ER22a	ExonRegion	0	11.14	3.25	6.83	3.39	295.48	3.05	32.22
58	E22_Da	NovelBoundary	1	19.94	16.97	1.74	4.90	8.02	2.47	5.14
59	E22a_E23a	KnownJunction	0	9.78	2.57	6.58	1.00	301.55	0.00	41.29
60	E22a_E25a	NovelJunction	0	0.68	0.00	0.00	0.00	24.85	0.00	0.00
61	E23_Aa	NovelBoundary	0	6.54	8.80	3.02	3.68	2.95	1.23	6.02
62	ER23a	ExonRegion	0	14.01	2.50	9.72	2.90	327.90	4.16	40.04
63	E23_Da	NovelBoundary	0	7.14	3.57	0.79	4.25	5.19	8.95	5.62
64	E23a_E24a	KnownJunction	0	10.51	0.00	9.13	0.00	303.31	0.00	43.01
65	E23a_E25a	KnownJunction	0	0.75	0.00	0.00	0.00	29.92	1.66	0.00
66	E24_Aa	NovelBoundary	0	8.41	12.24	6.29	9.24	6.73	5.98	2.46
67	ER24a	ExonRegion	0	18.92	11.31	13.10	5.67	440.82	3.60	36.41
68	E24_Da	NovelBoundary	0	10.33	9.35	3.61	5.66	23.77	1.34	2.26
69	E24a_E25a	KnownJunction	1	5.07	2.60	14.95	1.16	476.62	0.00	33.87
70	ER25a	ExonRegion	0	18.35	3.46	14.11	2.76	525.90	3.11	42.94
71	E25a_E26a	KnownJunction	0	9.28	1.55	9.11	1.44	361.35	0.00	33.18
72	ER26a	ExonRegion	0	9.06	3.72	13.01	0.32	494.39	0.73	32.25
73	E26a_E27a	KnownJunction	0	12.33	6.09	15.63	0.00	524.98	2.68	27.85
74	E27_Aa	NovelBoundary	0	15.04	1.08	11.02	1.49	2.12	0.00	6.08
75	ER27a	ExonRegion	0	20.63	5.73	12.63	2.43	636.25	4.19	39.78
76	E27_Da	NovelBoundary	0	3.62	4.70	4.70	2.41	3.20	2.33	8.64
77	E27a_E28a	KnownJunction	0	11.02	2.68	8.71	0.00	554.81	3.32	39.87
78	ER28a	ExonRegion	0	17.11	2.99	10.33	0.00	469.89	1.93	39.22
79	E28a_E29a	KnownJunction	0	20.09	2.60	11.81	0.00	422.07	0.00	31.96
80	ER29a	ExonRegion	0	20.49	6.64	11.80	6.64	520.80	3.39	39.24
81	E29a_E30a	KnownJunction	0	17.29	1.23	9.27	0.00	451.49	4.58	40.30
82	E30_Aa	NovelBoundary	0	13.55	3.26	4.63	2.11	1.18	1.31	5.83
83	ER30a	ExonRegion	0	13.21	2.18	8.84	0.65	535.71	2.26	33.56
84	E30a_E31a	KnownJunction	0	3.55	1.13	5.09	1.68	359.79	1.63	21.21
85	ER31a	ExonRegion	0	6.83	1.67	9.63	0.56	450.59	5.74	28.20
86	E31a_E32a	KnownJunction	0	8.96	1.63	9.28	0.00	392.01	4.02	34.38
87	ER32a	ExonRegion	0	13.22	4.13	7.55	2.15	418.84	5.02	34.90
88	E32a_E33a	KnownJunction	0	8.68	0.00	7.20	1.38	370.09	1.66	25.70
89	ER33a	ExonRegion	0	11.94	0.02	7.04	1.25	336.79	4.31	35.94
90	E33_Da	NovelBoundary	0	7.13	2.55	10.04	7.61	1.18	4.45	4.63
91	E33a_E34a	KnownJunction	0	11.32	0.00	5.25	0.00	411.79	6.49	31.83
92	ER34a	ExonRegion	0	10.82	1.26	3.54	1.31	242.29	3.27	31.89
93	E34a_E35a	KnownJunction	0	5.96	1.21	4.80	3.22	205.95	0.00	25.35
94	I34_AR1	ActiveIntronRegion	0	4.98	8.99	2.82	5.74	8.79	3.02	5.30
95	ER35a	ExonRegion	0	5.21	1.78	4.59	3.74	247.23	3.87	27.46
96	E35_Da	NovelBoundary	0	7.73	0.00	5.56	10.40	7.03	3.19	8.74
97	E35a_E36a	KnownJunction	0	7.59	2.84	5.93	1.68	356.58	5.57	29.01
98	I35	Intron	0	8.18	7.62	10.17	3.97	4.35	5.68	5.73
99	I35_AR1	ActiveIntronRegion	0	8.99	10.56	13.75	5.67	5.28	6.81	7.08
100	E36_Aa	NovelBoundary	0	9.26	6.59	15.53	10.84	4.45	2.84	4.51
101	ER36a	ExonRegion	0	8.54	7.26	4.33	2.26	298.42	2.61	31.52
102	E36a_E37a	KnownJunction	1	3.55	4.12	2.43	3.33	312.39	1.66	27.22
103	E37_Aa	NovelBoundary	0	7.59	8.96	5.39	13.65	4.26	9.97	4.13
104	ER37a	ExonRegion	0	10.90	7.51	10.15	6.22	383.44	7.50	35.23
105	E37_Da	NovelBoundary	0	9.10	8.22	16.28	6.29	13.00	14.61	12.07
106	E37a_E38a	KnownJunction	0	9.46	4.65	3.54	0.00	380.28	2.49	31.21
107	I37	Intron	0	12.32	14.71	16.25	13.16	11.00	8.56	10.14
108	I37_SR1	SilentIntronRegion	0	12.61	14.98	16.58	13.48	11.23	8.76	10.36
109	E38_Aa	NovelBoundary	0	60.65	82.23	103.32	40.80	36.26	54.99	59.10
110	ER38a	ExonRegion	0	4.35	2.09	3.00	1.04	225.73	2.61	20.51
111	E38_Da	KnownBoundary	0	23.37	55.88	45.83	33.38	187.63	44.41	36.67
112	ER38b	ExonRegion	0	14.34	3.90	8.58	2.48	181.70	1.91	13.93