Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DNAJA4	Gene	0	95.45	249.63	93.37	412.64	33.08	626.50	3.67
2	394855	Transcript	0	0	0	0	0	0	0	0
3	343789	Transcript	0	0	0	0	0	0	0	0
4	394852	Transcript	0	1.15	13.66	1.30	12.44	0.11	23.23	0.00
5	ER1a	ExonRegion	0	0.64	0.37	0.73	2.83	0.83	5.45	0.00
6	E1a_E2b	KnownJunction	0	0.00	1.18	0.82	6.58	1.91	11.63	0.00
7	ER2a	ExonRegion	0	1.15	13.66	1.30	12.44	0.11	23.23	0.00
8	E2_Ab	KnownBoundary	0	8.50	49.55	10.55	49.63	1.89	96.80	0.00
9	ER2b	ExonRegion	0	19.98	111.34	25.41	214.08	7.89	271.02	3.22
10	E2a_E3a	KnownJunction	0	24.27	78.81	30.61	208.60	16.39	210.08	0.64
11	I2	Intron	0	22.56	81.01	28.79	83.28	3.20	176.28	0.47
12	I2_AR1	ActiveIntronRegion	0	50.37	154.60	60.90	173.98	5.17	359.24	0.75
13	I2_SR2	SilentIntronRegion	0	31.31	150.43	52.09	186.68	4.47	329.44	2.09
14	I2_AR2	ActiveIntronRegion	0	26.94	146.31	38.36	149.80	3.05	314.06	1.26
15	I2_SR3	SilentIntronRegion	0	13.30	64.12	17.90	51.56	2.42	112.50	0.34
16	I2_SR4	SilentIntronRegion	0	19.93	42.71	18.93	41.92	3.21	99.16	0.36
17	I2_AR4	ActiveIntronRegion	0	16.76	65.15	25.25	73.69	3.97	155.08	0.33
18	E3_Aa	NovelBoundary	0	34.13	92.71	32.23	107.74	4.45	231.01	1.99
19	ER3a	ExonRegion	0	62.61	241.98	84.91	455.61	16.72	607.48	4.17
20	E3a_E4a	KnownJunction	0	56.93	236.63	78.85	461.58	11.76	642.34	3.22
21	ER4a	ExonRegion	0	54.60	283.11	87.01	433.12	20.35	600.32	3.51
22	E4_Da	NovelBoundary	0	16.37	26.93	25.25	24.52	0.00	44.54	0.00
23	E4a_E5a	KnownJunction	0	53.66	253.55	79.32	366.33	18.26	528.87	3.70
24	ER5a	ExonRegion	0	74.70	281.10	88.13	412.63	23.45	597.13	3.59
25	E5_Da	NovelBoundary	0	20.73	66.49	31.53	68.81	6.34	200.70	3.74
26	E5a_E6a	KnownJunction	0	109.90	218.00	85.10	384.15	30.87	371.58	1.35
27	E5a_E7a	NovelJunction	0	14.20	61.24	18.61	76.97	3.41	142.79	1.06
28	I5	Intron	0	38.93	145.06	59.17	180.01	7.61	402.55	2.15
29	I5_AR1	ActiveIntronRegion	0	38.99	145.30	59.28	180.32	7.62	403.26	2.15
30	E6_Aa	NovelBoundary	0	33.81	160.57	45.50	172.98	4.43	433.49	0.76
31	ER6a	ExonRegion	0	155.86	347.20	155.09	561.26	41.86	864.56	4.57
32	E6a_E7a	KnownJunction	0	159.81	340.95	158.03	580.43	41.91	808.09	6.45
33	I6	Intron	1	12.56	45.41	15.50	50.72	0.86	182.78	0.61
34	I6_AR1	ActiveIntronRegion	0	8.53	42.74	14.15	50.82	0.82	161.83	0.41
35	I6_SR2	SilentIntronRegion	1	28.34	27.36	18.76	33.89	1.23	146.95	0.94
36	I6_AR2	ActiveIntronRegion	1	15.77	42.38	18.54	43.67	0.97	161.40	0.93
37	I6_SR3	SilentIntronRegion	0	14.58	51.48	16.55	68.02	0.12	191.75	0.46
38	I6_AR3	ActiveIntronRegion	0	19.24	47.79	27.74	58.34	2.41	159.28	2.06
39	I6_AR4	ActiveIntronRegion	1	12.31	59.72	13.56	64.72	0.77	247.52	0.53
40	E7_Aa	NovelBoundary	1	81.96	60.58	58.39	63.20	0.88	260.09	0.54
41	ER7a	ExonRegion	0	275.13	410.66	220.65	832.28	65.63	1142.63	7.77
42	E7_Da	NovelBoundary	0	136.79	5.04	95.43	17.61	0.99	72.04	1.26
43	E7a_E8a	KnownJunction	0	371.30	491.83	240.47	1056.25	74.81	1581.32	4.73
44	ER8a	ExonRegion	0	112.68	287.98	106.22	470.95	42.59	737.44	4.15
45	ER8b	ExonRegion	0	1.92	3.64	2.03	2.49	0.00	7.36	0.00
46	IG47	Intergenic	0	4.31	22.04	6.84	36.48	1.19	202.86	0.32
47	IG47_SR3	SilentIntergenicRegion	0	5.78	13.43	5.93	37.76	1.41	156.34	0.84
48	IG47_AR2	ActiveIntergenicRegion	0	8.71	17.01	11.85	50.50	0.81	222.93	0.67
49	IG47_SR4	SilentIntergenicRegion	0	4.39	26.94	7.84	40.35	1.28	238.98	0.22