Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DUOX1	Gene	0	5.57	5.60	1.78	5.84	4.13	4.67	77.29
2	321429	Transcript	0	0.30	0.32	0.00	1.94	0.29	0.80	7.51
3	389037	Transcript	0	0.00	0.00	0.00	1.27	1.15	0.00	2.48
4	ER1a	ExonRegion	0	0.57	0.02	0.48	0.24	0.18	0.00	30.20
5	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	3.07
6	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	1.27	1.15	0.00	2.48
7	E2_Aa	NovelBoundary	0	2.69	1.21	0.75	0.00	0.00	11.10	8.76
8	ER2a	ExonRegion	0	0.89	0.95	0.00	5.83	0.86	2.40	12.42
9	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	7.04
10	E3_Aa	NovelBoundary	0	0.70	1.26	1.45	2.57	0.00	8.42	9.59
11	ER3a	ExonRegion	0	1.16	0.86	1.77	1.96	1.07	4.14	36.90
12	E3a_E4a	KnownJunction	0	1.20	0.00	1.24	1.68	0.99	0.00	58.96
13	ER4a	ExonRegion	0	2.55	0.00	1.11	1.68	1.43	0.06	48.00
14	E4a_E5a	KnownJunction	0	2.95	0.00	1.39	0.00	3.14	0.00	41.26
15	ER5a	ExonRegion	0	2.75	1.68	1.05	0.63	1.36	2.27	50.44
16	E5a_E6a	KnownJunction	0	1.03	0.00	0.56	0.00	1.18	0.00	41.15
17	ER6a	ExonRegion	0	2.53	3.22	0.30	2.02	0.74	2.93	31.18
18	E6a_E7a	KnownJunction	0	0.63	3.15	0.00	0.00	0.00	1.55	24.38
19	ER7a	ExonRegion	0	2.36	1.63	0.00	1.15	0.57	2.31	20.42
20	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER8a	ExonRegion	0	1.52	2.98	0.92	0.68	1.18	0.00	36.38
22	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	ER9a	ExonRegion	0	2.75	4.72	0.43	0.96	1.62	0.00	52.13
24	E9a_E10a	KnownJunction	0	7.61	2.42	1.85	1.38	3.11	0.00	67.27
25	ER10a	ExonRegion	0	4.59	5.52	1.83	5.53	3.05	0.05	69.70
26	E10a_E11a	KnownJunction	0	2.39	10.35	0.00	7.94	2.77	0.00	45.57
27	ER11a	ExonRegion	0	2.70	5.62	0.72	5.63	2.53	4.01	39.53
28	E11a_E12a	KnownJunction	0	4.66	4.54	0.75	1.57	4.20	0.00	42.98
29	I11_SR1	SilentIntronRegion	0	1.05	2.43	0.78	6.41	0.62	8.24	5.77
30	ER12a	ExonRegion	0	4.48	6.02	0.35	3.35	2.43	1.45	56.99
31	E12a_E13a	KnownJunction	0	4.72	1.44	0.00	0.00	0.00	1.66	43.93
32	ER13a	ExonRegion	0	5.47	3.41	0.30	5.93	2.85	5.54	60.53
33	E13_Da	NovelBoundary	0	1.00	1.60	0.00	11.35	0.00	6.08	1.75
34	E13a_E14a	KnownJunction	0	4.81	1.13	0.00	1.19	4.36	0.00	59.10
35	ER14a	ExonRegion	0	5.13	5.58	0.64	0.96	2.59	2.65	70.99
36	E14a_E15a	KnownJunction	0	3.97	4.20	0.65	1.60	2.84	0.00	62.41
37	ER15a	ExonRegion	0	5.22	6.97	0.78	3.87	3.91	1.57	67.67
38	E15_Da	NovelBoundary	0	0.00	1.63	0.00	17.31	0.00	10.77	1.39
39	E15a_E16a	KnownJunction	0	2.29	3.26	0.00	1.68	2.01	0.00	53.50
40	ER16a	ExonRegion	0	4.28	2.10	0.00	3.10	4.77	1.35	48.41
41	E16a_E17a	KnownJunction	0	6.71	3.26	0.00	2.11	6.32	0.00	44.71
42	ER17a	ExonRegion	0	4.30	3.72	0.49	1.06	3.62	0.79	51.75
43	E17a_E18a	KnownJunction	0	3.92	2.68	1.78	1.35	7.65	0.00	43.27
44	ER18a	ExonRegion	0	3.78	6.41	0.94	6.50	2.94	2.78	48.08
45	E18_Da	NovelBoundary	0	3.39	4.23	0.00	8.10	0.00	6.73	4.61
46	E18a_E19a	KnownJunction	0	1.77	5.49	1.91	0.00	4.59	0.00	50.55
47	ER19a	ExonRegion	0	4.88	6.68	1.16	1.50	3.17	4.44	56.65
48	E19_Da	NovelBoundary	0	2.70	4.23	0.89	0.00	0.00	8.68	4.87
49	E19a_E20a	KnownJunction	0	3.55	6.36	2.39	0.00	9.38	0.00	66.10
50	ER20a	ExonRegion	0	7.15	5.12	0.72	2.10	3.77	2.90	84.34
51	E20_Da	NovelBoundary	0	0.83	6.75	0.00	5.07	0.00	14.02	0.89
52	E20a_E21a	KnownJunction	0	9.21	5.67	0.55	0.00	8.23	0.00	120.83
53	ER21a	ExonRegion	0	5.23	8.67	0.32	4.14	6.56	0.99	131.62
54	E21_Da	NovelBoundary	0	2.74	2.89	2.30	4.33	1.13	10.18	10.03
55	E21a_E22a	KnownJunction	0	5.96	7.99	0.00	2.36	4.20	0.00	124.38
56	ER22a	ExonRegion	0	4.91	10.24	2.28	2.08	6.44	1.59	122.57
57	E22a_E23a	KnownJunction	0	8.01	3.97	1.48	0.00	6.59	0.00	92.68
58	ER23a	ExonRegion	0	7.84	4.56	1.63	1.26	7.39	2.03	90.02
59	E23_Da	NovelBoundary	0	1.79	1.63	1.88	12.11	0.99	2.68	5.40
60	E23a_E24a	KnownJunction	0	6.84	2.89	3.25	0.00	6.45	2.63	93.97
61	E24_Aa	NovelBoundary	0	0.78	4.10	4.01	12.73	2.03	7.64	3.28
62	ER24a	ExonRegion	0	10.61	4.81	3.65	9.79	4.33	5.25	106.65
63	E24_Da	NovelBoundary	0	6.04	2.84	2.41	18.18	2.26	4.40	12.70
64	E24a_E25a	KnownJunction	0	11.18	4.36	2.13	1.14	9.94	2.41	87.06
65	I24	Intron	0	3.15	4.36	3.13	8.29	0.41	5.00	3.98
66	I24_SR1	SilentIntronRegion	0	3.17	4.39	3.15	8.35	0.41	5.02	4.01
67	ER25a	ExonRegion	0	9.62	9.97	2.82	9.26	7.60	13.14	111.86
68	E25_Da	NovelBoundary	0	4.27	1.50	2.24	14.14	1.04	18.14	8.18
69	E25a_E26a	KnownJunction	0	10.55	5.81	1.39	1.52	5.92	0.00	140.19
70	ER26a	ExonRegion	0	9.88	5.40	2.31	3.84	6.89	1.21	137.57
71	E26a_E27a	KnownJunction	0	5.69	7.15	0.89	0.00	2.19	0.00	163.81
72	I26	Intron	0	4.86	4.15	2.00	10.06	1.40	9.90	8.92
73	I26_AR1	ActiveIntronRegion	0	6.12	5.26	2.44	12.81	1.75	12.61	10.42
74	ER27a	ExonRegion	0	5.08	5.07	1.93	3.72	5.16	5.59	142.82
75	E27_Da	NovelBoundary	0	0.00	4.05	0.00	8.02	0.00	2.79	3.63
76	E27a_E28a	KnownJunction	0	2.29	3.81	2.23	0.00	6.29	0.00	85.69
77	E28_Aa	NovelBoundary	0	1.72	1.34	2.49	15.09	0.95	10.21	10.79
78	ER28a	ExonRegion	0	2.27	3.28	2.14	0.25	2.83	0.71	106.59
79	E28_Da	NovelBoundary	0	2.02	0.00	0.80	5.20	0.00	11.74	0.54
80	E28a_E29a	KnownJunction	0	4.91	3.10	1.21	1.11	1.11	1.53	131.28
81	I28_SR1	SilentIntronRegion	0	4.83	3.15	1.76	8.28	1.03	6.56	5.10
82	E29_Aa	NovelBoundary	0	2.54	1.13	3.94	7.83	0.00	11.71	6.62
83	ER29a	ExonRegion	0	7.25	3.18	1.86	7.35	5.32	5.56	118.55
84	E29_Da	NovelBoundary	0	1.94	1.60	5.43	11.08	0.00	6.38	7.51
85	E29a_E30a	KnownJunction	0	2.35	1.63	0.00	0.00	6.59	0.00	96.98
86	I29	Intron	0	3.87	3.12	2.81	14.79	1.98	11.93	7.57
87	I29_SR1	SilentIntronRegion	0	2.52	3.27	1.95	11.90	1.23	5.44	5.53
88	I29_SR2	SilentIntronRegion	0	6.19	3.89	4.11	20.84	2.74	20.48	10.38
89	E30_Aa	NovelBoundary	0	0.90	4.70	3.55	31.13	1.18	15.92	10.03
90	ER30a	ExonRegion	0	5.63	10.08	1.42	13.98	4.74	12.04	98.71
91	E30_Da	NovelBoundary	0	5.26	1.26	1.94	12.73	0.95	15.30	4.90
92	E30a_E31a	KnownJunction	0	5.34	8.72	1.26	0.00	1.11	0.00	66.53
93	ER31a	ExonRegion	0	6.48	11.91	0.85	8.99	4.06	6.84	79.27
94	E31_Da	NovelBoundary	0	0.85	3.70	4.34	10.84	2.35	8.52	5.53
95	E31a_E32a	KnownJunction	0	5.44	8.01	0.62	0.00	4.01	3.27	76.23
96	I31	Intron	0	0.63	1.85	1.04	11.05	2.47	3.75	5.79
97	I31_SR1	SilentIntronRegion	0	0.64	1.88	1.06	11.26	2.51	3.82	5.89
98	E32_Aa	NovelBoundary	0	2.85	2.50	0.00	10.54	4.06	16.37	7.19
99	ER32a	ExonRegion	0	8.60	5.78	2.04	10.01	5.93	2.28	100.06
100	E32_Da	NovelBoundary	0	4.24	5.78	4.83	8.72	0.00	11.47	6.46
101	E32a_E33a	KnownJunction	0	12.47	6.73	2.67	0.00	8.02	0.00	129.79
102	I32	Intron	0	1.65	2.32	2.38	11.48	1.17	7.74	5.08
103	I32_AR2	ActiveIntronRegion	0	1.18	1.00	2.55	9.46	0.81	6.13	4.37
104	I32_AR3	ActiveIntronRegion	0	3.45	2.43	3.06	17.26	2.19	9.21	5.07
105	I32_AR4	ActiveIntronRegion	0	6.12	3.55	2.66	17.81	1.46	8.73	5.45
106	I32_AR5	ActiveIntronRegion	0	6.18	4.22	3.32	17.46	1.04	7.24	6.94
107	I32_AR6	ActiveIntronRegion	0	6.44	3.64	4.74	16.99	2.63	7.97	9.87
108	I32_AR7	ActiveIntronRegion	0	6.75	3.64	4.82	18.57	3.69	5.59	9.82
109	I32_AR8	ActiveIntronRegion	0	5.48	2.99	7.34	18.86	5.20	7.25	9.87
110	I32_AR9	ActiveIntronRegion	0	4.61	1.62	6.77	18.01	3.96	13.89	10.72
111	I32_AR10	ActiveIntronRegion	0	3.84	0.20	5.87	17.25	2.97	16.35	9.67
112	I32_AR11	ActiveIntronRegion	0	3.21	0.00	5.54	15.98	1.69	16.61	8.10
113	I32_AR12	ActiveIntronRegion	0	1.87	0.00	5.71	11.58	0.46	14.71	8.10
114	I32_AR13	ActiveIntronRegion	0	1.05	0.00	4.24	10.30	0.00	13.94	8.34
115	I32_AR14	ActiveIntronRegion	0	1.43	0.78	2.66	7.57	0.00	14.36	7.66
116	I32_SR1	SilentIntronRegion	0	1.12	2.47	1.98	10.91	1.01	7.30	4.60
117	E33_Aa	NovelBoundary	0	1.50	2.60	1.68	8.61	0.95	5.12	11.04
118	ER33a	ExonRegion	0	7.66	10.39	2.30	4.85	5.95	9.48	128.22
119	E33_Da	NovelBoundary	0	1.62	2.60	5.37	13.27	0.00	13.69	6.15
120	E33a_E34a	KnownJunction	0	13.57	10.11	1.71	0.00	6.20	0.00	134.89
121	E34_Aa	NovelBoundary	0	3.25	4.60	0.89	11.76	0.00	15.52	7.11
122	ER34a	ExonRegion	0	10.55	8.09	4.34	4.43	6.82	3.55	136.08
123	E34_Da	NovelBoundary	0	0.63	6.02	3.10	9.35	2.26	4.50	8.99
124	E34a_E35a	KnownJunction	0	2.74	4.39	0.89	0.00	5.09	0.00	59.53
125	I34	Intron	0	1.67	1.41	2.50	8.44	1.69	7.01	6.39
126	I34_SR1	SilentIntronRegion	0	1.68	1.42	2.51	8.50	1.70	7.06	6.43
127	E35_Aa	NovelBoundary	0	3.52	1.63	4.04	10.92	2.17	7.72	5.98
128	ER35a	ExonRegion	0	7.69	6.90	4.98	15.04	6.80	11.20	89.23
129	IG9	Intergenic	0	1.23	1.31	1.40	7.18	0.72	9.36	2.30
130	IG9_AR1	ActiveIntergenicRegion	0	2.30	1.65	2.14	9.71	0.83	14.29	4.44