Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CALML4	Gene	0	12.84	14.41	24.12	27.39	42.19	22.65	19.52
2	395465	Transcript	1	1.03	4.41	9.79	1.06	11.30	6.51	3.22
3	354678	Transcript	1	0.00	0.00	2.18	14.41	1.11	7.50	2.26
4	315415	Transcript	0	0.75	0.00	0.00	0.00	0.00	0.00	0.00
5	395463	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	IG28	Intergenic	0	4.22	6.73	10.40	13.45	25.55	8.14	10.50
7	IG28_AR1	ActiveIntergenicRegion	0	4.73	7.00	11.63	14.84	28.52	8.52	12.26
8	IG28_SR1	SilentIntergenicRegion	0	3.05	6.12	7.54	10.22	18.61	7.26	6.35
9	ER1a	ExonRegion	0	2.13	2.14	1.89	6.40	14.09	3.20	3.07
10	E1_Ab	KnownBoundary	0	3.71	4.86	7.23	14.36	26.90	7.08	7.05
11	ER1b	ExonRegion	0	4.20	7.00	11.91	16.94	24.03	13.68	11.92
12	E1a_E2a	KnownJunction	1	2.04	6.25	10.15	10.35	13.97	6.35	5.49
13	E1a_E3a	KnownJunction	0	0.75	0.00	0.00	0.00	0.00	0.00	0.00
14	E1a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	E2a_E3a	KnownJunction	1	1.03	4.41	9.79	1.06	11.30	6.51	3.22
16	E2a_E4a	KnownJunction	1	0.00	0.00	2.18	14.41	1.11	7.50	2.26
17	ER2a	ExonRegion	1	1.56	6.51	12.32	18.22	11.78	13.05	6.22
18	I2	Intron	1	2.09	3.17	4.93	3.31	15.45	2.80	7.33
19	I2_AR1	ActiveIntronRegion	0	2.66	5.51	8.26	5.91	14.56	1.68	6.74
20	I2_SR1	SilentIntronRegion	0	1.47	3.29	7.21	2.39	16.00	3.04	7.16
21	I2_AR2	ActiveIntronRegion	1	4.64	1.49	5.82	0.96	16.82	7.49	11.57
22	I2_AR3	ActiveIntronRegion	0	0.78	2.99	4.08	2.23	12.42	3.47	4.50
23	I2_AR4	ActiveIntronRegion	1	2.44	1.31	5.79	5.55	19.52	1.72	9.88
24	I2_AR5	ActiveIntronRegion	1	3.61	3.92	9.07	7.87	16.94	2.45	10.59
25	I2_AR6	ActiveIntronRegion	1	3.33	7.15	10.09	8.73	21.87	5.59	10.76
26	I2_SR2	SilentIntronRegion	1	2.14	3.06	5.22	2.49	25.74	3.17	7.95
27	I2_AR7	ActiveIntronRegion	1	1.91	3.16	4.06	3.49	12.53	3.17	9.02
28	I2_SR3	SilentIntronRegion	0	2.37	2.54	4.12	3.04	13.60	1.81	4.80
29	E3_Aa	NovelBoundary	1	1.70	4.89	4.50	56.76	13.00	9.22	5.98
30	ER3a	ExonRegion	0	4.55	5.66	11.88	4.45	25.67	3.83	11.81
31	E3_Da	NovelBoundary	0	3.57	4.49	0.00	1.16	18.60	2.55	4.11
32	E3a_E4a	KnownJunction	1	1.39	4.18	8.05	7.42	32.34	7.69	12.48
33	I3	Intron	1	4.95	12.76	5.37	11.37	18.38	12.30	23.43
34	I3_SR1	SilentIntronRegion	0	1.65	1.96	3.49	2.50	18.34	3.34	5.64
35	I3_AR1	ActiveIntronRegion	1	6.18	16.78	6.08	14.68	18.42	15.64	30.07
36	E4_Aa	NovelBoundary	1	4.39	17.71	12.34	16.01	28.19	14.31	22.70
37	ER4a	ExonRegion	1	8.16	22.98	33.21	58.75	67.68	44.24	33.15
38	E4_Da	NovelBoundary	1	1.70	5.67	0.60	0.00	2.07	7.80	7.48
39	E4a_E5a	KnownJunction	0	8.75	19.07	28.05	46.65	52.56	49.61	22.23
40	I4	Intron	1	2.28	3.76	0.79	2.49	2.75	3.80	8.82
41	I4_SR1	SilentIntronRegion	1	2.34	5.01	0.48	2.42	2.80	4.59	8.39
42	I4_AR1	ActiveIntronRegion	1	1.87	3.98	1.19	3.47	3.37	5.07	11.73
43	E5_Aa	NovelBoundary	1	0.72	2.55	0.65	4.39	0.95	0.00	7.98
44	ER5a	ExonRegion	0	8.81	17.63	33.06	31.62	56.21	28.87	25.16
45	E5_Da	KnownBoundary	0	6.81	14.06	18.16	14.17	25.22	8.15	10.15
46	ER5b	ExonRegion	0	16.47	16.21	26.96	29.32	45.56	24.38	20.91
47	IG27	Intergenic	0	53.43	51.35	64.79	81.16	91.50	74.04	42.28
48	IG27_AR2	ActiveIntergenicRegion	0	2.25	0.00	0.00	0.00	12.51	0.00	0.00
49	IG27_AR1	ActiveIntergenicRegion	0	54.56	52.49	66.22	82.95	93.26	75.68	43.21