Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RORA	Gene	0	56.67	89.12	12.54	20.52	20.90	155.26	8.62
2	335670	Transcript	0	1.99	3.97	0.99	0.57	0.95	4.92	1.53
3	261523	Transcript	0	0.28	0.44	0.12	0.00	0.19	0.68	0.12
4	309157	Transcript	0	0.00	0.14	0.18	0.03	0.10	0.06	0.01
5	ER1a	ExonRegion	0	1.29	5.42	0.62	1.70	1.01	5.23	0.71
6	I1_AR4	ActiveIntronRegion	0	3.78	0.60	1.75	1.59	8.26	1.84	0.77
7	I1_SR4	SilentIntronRegion	0	4.53	2.73	0.68	1.65	12.32	4.29	1.34
8	I1_AR5	ActiveIntronRegion	0	8.07	3.77	1.53	0.87	15.53	4.43	1.54
9	E2a_E7a	KnownJunction	0	2.62	4.07	1.45	0.00	1.04	6.14	1.85
10	ER2a	ExonRegion	0	2.07	2.43	0.90	0.00	0.81	3.39	2.02
11	ER3a	ExonRegion	0	0.79	0.31	0.00	0.64	0.55	0.00	0.35
12	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER4a	ExonRegion	0	0.01	0.42	0.03	0.09	0.31	0.17	0.02
15	E4a_E7a	KnownJunction	0	0.00	0.00	0.50	0.00	0.00	0.00	0.00
16	E5_Aa	NovelBoundary	1	304.26	1.39	598.38	2.52	370.71	2.57	0.00
17	ER5a	ExonRegion	0	1.39	2.19	0.61	0.00	0.96	3.41	0.60
18	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	ER6a	ExonRegion	0	0.00	0.03	0.00	0.00	0.00	0.00	0.00
20	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER7a	ExonRegion	1	18.69	88.67	9.41	19.55	11.38	111.64	3.55
22	E7a_E8a	KnownJunction	0	36.53	124.63	12.34	29.99	16.60	216.35	8.58
23	ER8a	ExonRegion	0	50.05	169.58	15.66	34.77	26.62	252.45	13.42
24	E8a_E9a	KnownJunction	1	40.24	151.48	13.32	37.28	15.88	254.97	16.65
25	I8	Intron	0	26.54	14.13	5.25	3.07	1.92	15.99	1.13
26	I8_SR1	SilentIntronRegion	0	30.69	15.25	6.00	3.47	1.89	18.51	1.43
27	I8_AR1	ActiveIntronRegion	1	21.75	12.27	5.42	4.24	3.24	10.42	0.00
28	I8_AR2	ActiveIntronRegion	0	17.07	10.30	3.77	2.33	1.55	6.77	0.00
29	I8_AR4	ActiveIntronRegion	0	18.14	3.98	2.95	0.86	2.39	4.05	0.21
30	I8_AR5	ActiveIntronRegion	0	21.11	17.03	2.91	3.49	1.33	16.99	1.29
31	I8_SR3	SilentIntronRegion	0	16.08	16.23	3.39	2.39	1.98	21.43	2.02
32	I8_AR6	ActiveIntronRegion	0	24.15	17.88	5.64	2.72	1.92	17.27	0.75
33	E9_Aa	NovelBoundary	1	25.82	12.01	7.14	8.64	5.97	26.61	2.22
34	ER9a	ExonRegion	0	59.26	146.02	13.20	33.72	24.95	257.55	12.48
35	E9a_E10a	KnownJunction	0	53.16	131.99	10.02	33.19	9.31	234.66	6.12
36	I9_AR1	ActiveIntronRegion	0	14.86	7.33	3.05	0.00	5.66	5.56	4.51
37	E10_Aa	NovelBoundary	1	25.03	2.94	5.52	1.68	1.11	2.79	0.00
38	ER10a	ExonRegion	0	80.89	155.34	17.82	38.72	29.36	280.74	12.52
39	E10a_E11a	KnownJunction	0	96.72	133.41	19.69	36.84	42.76	272.79	17.37
40	ER11a	ExonRegion	0	125.36	172.56	23.39	43.92	39.21	295.28	19.28
41	E11a_E12a	KnownJunction	0	149.53	174.99	26.69	41.56	47.74	299.41	21.50
42	ER12a	ExonRegion	0	152.91	158.87	26.86	36.51	43.51	275.62	22.42
43	E12a_E13a	KnownJunction	1	158.45	109.92	25.05	16.96	42.72	200.19	9.62
44	ER13a	ExonRegion	1	178.26	120.72	29.01	22.85	51.73	248.76	13.39
45	E13a_E14a	KnownJunction	0	159.71	117.62	35.94	16.85	49.63	246.05	14.09
46	ER14a	ExonRegion	0	127.34	100.20	26.10	16.91	41.65	210.59	11.54
47	E14a_E15a	KnownJunction	0	86.90	81.68	14.20	17.39	45.60	153.27	8.50
48	ER15a	ExonRegion	0	65.17	98.05	18.80	24.81	28.29	173.04	9.78
49	IG9	Intergenic	0	27.06	21.23	7.33	5.79	12.14	53.12	3.64
50	IG9_SR4	SilentIntergenicRegion	0	37.71	54.87	10.12	15.18	18.32	55.94	6.81
51	IG9_AR5	ActiveIntergenicRegion	0	42.54	33.52	9.88	7.42	13.69	49.53	4.00
52	IG9_AR4	ActiveIntergenicRegion	0	34.34	27.32	9.03	5.47	12.85	50.92	4.16
53	IG9_SR3	SilentIntergenicRegion	0	41.87	14.03	14.78	2.69	8.22	41.67	7.50
54	IG9_AR3	ActiveIntergenicRegion	0	48.60	37.59	13.46	11.52	23.83	115.31	6.92