Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MEIS2	Gene	0	29.47	10.01	8.89	15.15	0.80	159.80	12.69
2	397624	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.41	0.00
3	340545	Transcript	0	2.62	0.00	0.14	0.50	0.00	1.27	1.06
4	338564	Transcript	0	0.06	0.61	0.80	0.00	0.00	5.62	0.43
5	314177	Transcript	0	0	0	0	0	0	0	0
6	382766	Transcript	0	0	0	0	0	0	0	0
7	219869	Transcript	0	0	0	0	0	0	0	0
8	397620	Transcript	0	1.72	0.37	0.83	0.72	0.00	3.53	1.04
9	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.41	0.00
10	ER2a	ExonRegion	0	2.89	0.00	0.29	1.00	0.00	1.39	1.26
11	E2_Ab	KnownBoundary	0	2.52	0.00	0.89	0.00	0.00	2.68	1.36
12	ER2b	ExonRegion	0	4.46	0.00	1.29	0.30	0.26	2.30	3.11
13	E2a_E3b	KnownJunction	0	0.00	0.00	1.60	0.00	0.00	0.00	0.86
14	E2a_E5a	KnownJunction	0	2.35	0.00	0.00	0.00	0.00	1.15	0.86
15	ER3a	ExonRegion	0	13.33	5.74	4.26	5.51	0.00	56.95	2.49
16	E3_Ab	KnownBoundary	0	13.44	6.04	9.69	13.30	0.00	105.27	5.25
17	ER3b	ExonRegion	1	34.63	10.84	21.17	15.51	0.00	110.31	9.10
18	E3a_E5a	KnownJunction	1	13.64	9.64	11.08	18.48	0.00	72.41	11.12
19	ER4a	ExonRegion	0	1.85	1.11	0.55	0.71	0.00	2.16	1.57
20	E4a_E5a	KnownJunction	0	1.55	0.00	0.00	1.46	0.00	7.21	1.55
21	ER5a	ExonRegion	0	16.59	10.21	5.25	17.85	0.18	114.38	10.02
22	E5a_E6a	KnownJunction	1	24.72	14.87	5.33	11.89	1.01	93.29	16.27
23	E5a_E6b	KnownJunction	0	1.77	0.00	1.95	0.00	0.00	1.21	0.00
24	E5a_E7a	NovelJunction	1	4.44	0.00	0.59	2.74	0.00	71.88	0.00
25	E6_Ab	NovelBoundary	1	18.88	11.06	5.17	8.10	0.00	111.11	15.68
26	ER6a	ExonRegion	1	21.45	15.49	5.81	10.65	0.00	107.17	15.97
27	ER6b	ExonRegion	0	21.85	11.43	4.97	10.72	0.83	104.49	13.42
28	E6a_E7a	KnownJunction	0	46.40	16.03	13.18	15.06	2.17	196.04	17.15
29	ER7a	ExonRegion	0	73.89	19.94	17.80	27.46	3.46	283.23	25.54
30	E7a_E8a	KnownJunction	0	67.21	18.42	15.33	40.83	4.70	314.23	27.36
31	ER8a	ExonRegion	0	83.64	28.82	18.65	44.35	3.53	433.79	37.49
32	E8a_E9a	KnownJunction	0	76.04	29.42	22.37	33.54	0.00	423.38	37.15
33	ER9a	ExonRegion	0	60.71	32.76	17.42	39.53	1.66	388.44	29.99
34	E9a_E10a	KnownJunction	0	57.53	20.28	13.11	41.99	1.91	384.17	36.49
35	ER10a	ExonRegion	0	66.31	14.03	13.53	34.93	2.73	305.48	26.60
36	E10a_E11a	KnownJunction	1	82.25	13.69	10.71	33.13	5.23	327.55	31.14
37	E10a_E12a	NovelJunction	1	0.00	2.52	2.79	1.08	0.00	16.48	0.67
38	E10a_E13a	NovelJunction	1	0.00	0.00	0.00	0.00	0.00	8.31	0.00
39	I10_SR1	SilentIntronRegion	0	10.98	2.32	7.09	2.41	0.07	4.53	0.42
40	I10_AR2	ActiveIntronRegion	0	13.83	2.43	10.63	6.23	0.00	1.72	1.35
41	I10_AR3	ActiveIntronRegion	0	8.74	1.34	9.28	4.77	0.08	6.57	0.36
42	ER11a	ExonRegion	0	129.64	21.38	21.01	41.53	1.85	472.01	37.20
43	E11a_E12a	KnownJunction	1	120.68	24.91	17.50	32.05	0.00	435.87	39.78
44	E11a_E13a	NovelJunction	0	0.72	1.47	2.16	8.70	0.00	53.30	1.49
45	ER12a	ExonRegion	0	89.26	21.95	19.64	27.45	2.61	365.81	31.19
46	E12a_E13a	KnownJunction	0	74.85	18.15	20.18	16.20	1.87	333.58	26.15
47	ER13a	ExonRegion	0	83.56	12.91	18.87	29.74	1.83	314.96	31.47
48	E13a_E14a	KnownJunction	1	25.19	2.36	7.29	16.20	0.00	135.50	8.71
49	E13a_E14b	KnownJunction	1	44.11	3.15	9.11	25.63	2.21	139.04	28.66
50	E13a_E16a	NovelJunction	1	4.26	6.20	2.26	1.38	0.00	37.87	0.00
51	E14_Ab	NovelBoundary	0	20.48	7.59	7.44	5.55	0.00	122.37	7.14
52	ER14a	ExonRegion	0	28.12	6.35	7.05	13.72	0.07	155.59	9.41
53	ER14b	ExonRegion	0	37.65	18.39	14.48	21.76	2.08	292.53	29.99
54	E14a_E15a	KnownJunction	0	5.91	6.67	6.97	2.47	1.18	64.56	15.68
55	E14a_E16a	KnownJunction	0	21.76	12.32	6.12	15.69	0.90	230.50	10.38
56	ER15a	ExonRegion	1	14.37	3.48	4.20	3.83	1.63	64.75	27.64
57	E15a_E16a	KnownJunction	1	18.06	1.37	6.18	1.49	0.97	71.45	28.51
58	ER16a	ExonRegion	0	34.31	12.77	12.64	21.40	1.15	243.40	16.14
59	ER16b	ExonRegion	0	0.13	1.21	0.00	0.00	0.00	11.24	0.00
60	IG48_AR19	ActiveIntergenicRegion	0	2.81	0.00	1.07	0.78	0.09	8.74	1.44