Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AP1G2	Gene	0	275.40	77.09	139.01	28.61	117.71	12.58	146.40
2	397120	Transcript	1	230.59	41.88	120.62	16.25	113.07	0.00	95.50
3	308724	Transcript	0	14.23	12.09	10.79	8.00	2.67	2.92	7.15
4	ER1a	ExonRegion	0	23.15	13.75	16.38	8.75	9.17	3.89	13.88
5	E1_Da	KnownBoundary	0	11.38	22.91	22.35	5.69	3.00	5.84	17.64
6	E1a_E1b	KnownJunction	1	230.59	41.88	120.62	16.25	113.07	0.00	95.50
7	ER1b	ExonRegion	0	14.23	12.09	10.79	8.00	2.67	2.92	7.15
8	E1_Ab	KnownBoundary	1	110.07	17.79	63.67	13.92	3.34	3.24	12.65
9	ER1c	ExonRegion	0	158.60	65.25	95.59	25.59	35.73	8.56	83.66
10	E1_Db	NovelBoundary	0	33.85	24.27	35.62	16.82	5.44	15.12	23.99
11	E1b_E2a	KnownJunction	0	261.43	56.77	104.93	14.06	100.51	8.87	109.91
12	E1b_E3a	NovelJunction	1	41.96	12.87	60.56	3.28	11.48	4.37	32.70
13	I1	Intron	0	27.89	18.92	33.13	11.23	8.78	8.11	19.02
14	I1_AR1	ActiveIntronRegion	0	28.02	19.00	33.29	11.28	8.82	8.16	19.11
15	E2_Aa	NovelBoundary	0	35.12	30.32	29.93	13.25	5.67	14.28	22.84
16	ER2a	ExonRegion	0	299.27	76.40	114.68	23.67	133.66	13.49	115.61
17	E2_Da	NovelBoundary	0	40.37	17.42	39.50	12.95	11.46	10.72	29.01
18	E2a_E3a	KnownJunction	0	482.32	76.03	136.49	13.22	118.40	17.37	150.09
19	E3_Aa	NovelBoundary	0	70.75	23.96	67.45	5.15	16.81	6.73	34.51
20	ER3a	ExonRegion	0	449.48	128.49	209.46	34.56	162.75	20.23	219.06
21	E3_Da	NovelBoundary	0	18.76	13.98	27.85	9.54	2.21	5.63	21.37
22	E3a_E4a	KnownJunction	0	599.80	121.69	246.08	41.21	192.72	28.17	257.49
23	E4_Aa	NovelBoundary	0	17.19	20.68	13.55	8.59	5.51	6.46	16.48
24	ER4a	ExonRegion	0	450.49	98.25	204.07	43.39	192.82	13.95	225.97
25	E4_Da	NovelBoundary	0	79.53	46.19	46.34	10.38	10.47	4.74	57.05
26	E4a_E5a	KnownJunction	1	196.36	41.96	93.91	19.02	119.41	2.60	130.30
27	E4a_E6a	NovelJunction	0	25.15	5.36	20.74	1.08	8.81	0.00	10.69
28	I4	Intron	0	73.85	33.86	45.64	11.62	25.77	7.59	50.80
29	I4_AR1	ActiveIntronRegion	0	74.70	34.21	46.12	11.75	26.07	7.68	51.37
30	E5_Aa	NovelBoundary	0	89.17	41.22	49.30	15.69	20.03	2.95	46.13
31	ER5a	ExonRegion	0	234.43	69.61	120.77	35.66	145.58	10.38	157.28
32	E5_Da	NovelBoundary	1	104.96	19.55	52.38	10.65	6.75	3.11	15.46
33	E5a_E6a	KnownJunction	0	294.79	94.55	142.41	46.22	141.45	13.29	183.57
34	E6_Aa	NovelBoundary	0	27.10	35.26	39.50	7.26	10.26	2.97	22.82
35	ER6a	ExonRegion	0	411.39	97.99	189.84	48.31	202.98	12.73	224.32
36	E6_Da	NovelBoundary	1	112.07	57.98	65.76	9.29	15.19	5.63	23.98
37	E6a_E7a	KnownJunction	1	351.72	86.01	165.68	38.20	191.85	5.68	198.79
38	I6	Intron	0	69.55	17.61	39.71	3.83	20.45	3.29	12.50
39	I6_AR1	ActiveIntronRegion	0	69.88	17.68	39.88	3.85	20.54	3.30	12.55
40	E7_Aa	NovelBoundary	1	66.38	21.12	40.08	1.68	22.52	0.00	12.00
41	ER7a	ExonRegion	0	313.77	94.28	160.19	40.60	166.69	12.18	198.77
42	E7_Da	NovelBoundary	1	102.03	23.67	57.52	2.74	5.42	2.52	4.63
43	E7a_E8a	KnownJunction	0	274.88	96.63	146.20	28.69	119.51	16.40	202.62
44	ER8a	ExonRegion	0	353.16	96.98	199.66	32.22	192.18	10.06	235.51
45	E8a_E9a	KnownJunction	0	338.69	96.34	185.23	29.94	221.26	11.26	241.87
46	E9_Aa	NovelBoundary	0	15.27	18.71	10.55	1.16	0.95	8.55	12.35
47	ER9a	ExonRegion	1	289.21	92.59	170.82	28.08	212.31	6.35	226.37
48	E9a_E10a	KnownJunction	1	231.17	61.29	146.18	20.54	171.44	1.39	189.63
49	E10_Aa	NovelBoundary	0	107.98	47.08	67.99	27.28	31.54	10.08	58.01
50	ER10a	ExonRegion	0	322.04	87.92	182.96	20.10	206.35	6.35	224.78
51	E10_Da	NovelBoundary	0	71.20	31.53	62.08	18.34	17.08	9.06	43.41
52	E10a_E11a	KnownJunction	1	276.64	77.97	138.43	17.01	122.06	3.11	187.25
53	I10	Intron	0	67.49	21.96	43.15	8.00	20.84	4.93	25.85
54	I10_AR1	ActiveIntronRegion	0	68.13	22.19	43.57	8.08	21.04	4.98	26.10
55	E11_Aa	NovelBoundary	0	133.65	46.50	82.37	21.97	24.25	7.02	50.36
56	ER11a	ExonRegion	0	324.32	108.62	178.32	32.50	152.31	11.97	221.40
57	E11_Da	NovelBoundary	1	7.63	12.51	6.73	0.00	6.18	9.84	11.97
58	E11a_E12a	KnownJunction	1	317.41	106.27	160.83	26.82	153.07	6.30	228.63
59	ER12a	ExonRegion	0	264.03	87.98	125.83	31.72	167.77	10.54	183.72
60	E12_Da	NovelBoundary	0	50.20	30.34	24.23	6.69	5.03	7.16	26.04
61	E12a_E13a	KnownJunction	0	178.25	64.50	92.66	29.48	133.87	13.86	127.08
62	E13_Aa	NovelBoundary	0	48.33	29.92	21.80	5.96	6.25	4.85	26.87
63	ER13a	ExonRegion	0	230.19	78.15	123.64	30.80	129.07	13.99	164.52
64	E13a_E14a	KnownJunction	0	241.57	77.26	123.14	26.28	87.46	11.36	196.14
65	I13	Intron	0	32.02	7.34	24.05	6.98	26.51	1.38	16.09
66	I13_AR1	ActiveIntronRegion	0	32.14	7.37	24.14	7.00	26.60	1.39	16.15
67	ER14a	ExonRegion	0	300.82	88.47	163.49	34.57	148.29	15.53	214.37
68	E14a_E15a	KnownJunction	0	406.95	112.23	230.93	43.89	143.07	16.29	255.80
69	E15_Aa	NovelBoundary	0	4.76	4.36	10.88	11.27	4.03	1.63	10.13
70	ER15a	ExonRegion	0	460.17	112.24	220.01	36.34	177.48	20.63	241.15
71	E15_Da	NovelBoundary	1	141.50	23.25	57.64	13.55	27.78	1.66	34.37
72	E15a_E16a	KnownJunction	0	346.58	83.67	143.33	26.68	95.62	8.17	161.64
73	E15a_E17a	NovelJunction	0	23.02	4.05	20.78	5.12	23.08	1.47	34.31
74	I15	Intron	0	158.25	18.78	61.68	9.83	40.55	3.76	33.74
75	I15_AR1	ActiveIntronRegion	0	159.56	18.95	62.20	9.91	40.89	3.78	34.01
76	ER16a	ExonRegion	0	500.48	104.01	193.16	34.64	191.88	12.68	206.36
77	E16_Da	NovelBoundary	0	112.89	28.22	43.02	10.62	43.09	6.06	27.00
78	E16a_E17a	KnownJunction	0	660.92	113.10	258.09	36.17	205.49	10.02	218.21
79	I16	Intron	0	90.35	28.46	46.85	12.19	38.18	9.13	25.86
80	I16_AR1	ActiveIntronRegion	1	90.87	28.60	47.13	12.27	38.39	9.18	26.00
81	E17_Aa	NovelBoundary	0	119.62	63.42	76.61	16.77	45.69	9.30	41.45
82	ER17a	ExonRegion	0	601.72	146.46	287.96	51.12	233.29	17.06	247.99
83	E17a_E18a	KnownJunction	0	466.57	109.53	273.21	30.15	195.86	16.56	250.67
84	E18_Aa	NovelBoundary	1	206.82	17.60	118.33	11.19	5.79	4.53	30.54
85	ER18a	ExonRegion	0	459.67	123.66	238.26	44.35	180.23	24.32	205.53
86	E18a_E19a	KnownJunction	0	290.79	107.66	176.84	46.22	147.19	13.29	203.99
87	E19_Aa	NovelBoundary	1	182.62	13.45	92.13	8.18	5.07	10.26	23.59
88	ER19a	ExonRegion	0	457.17	128.83	263.54	55.36	199.59	27.56	268.52
89	E19a_E20a	KnownJunction	0	263.67	93.68	117.68	31.89	85.85	13.94	148.03
90	ER20a	ExonRegion	1	370.37	87.74	200.81	39.89	142.87	29.42	183.71
91	E20_Da	NovelBoundary	0	10.66	18.52	16.70	12.27	6.36	7.53	12.31
92	E20a_E21a	KnownJunction	0	337.17	63.60	172.72	27.52	154.27	16.64	132.35
93	E21_Aa	NovelBoundary	0	14.57	11.43	12.78	2.65	0.88	9.27	4.93
94	ER21a	ExonRegion	0	244.38	65.16	112.97	21.09	56.47	13.93	85.55