Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PCID2	Gene	0	94.79	64.15	132.80	94.67	250.62	85.88	82.21
2	337344	Transcript	0	0.19	1.00	1.10	0.92	3.02	0.54	1.08
3	351317	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	246505	Transcript	0	1.11	0.56	0.92	0.13	1.57	0.00	1.54
5	375462	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	375479	Transcript	0	0	0	0	0	0	0	0
7	375477	Transcript	0	0	0	0	0	0	0	0
8	375457	Transcript	0	6.28	10.71	6.36	17.53	4.51	7.55	3.14
9	375459	Transcript	0	0	0	0	0	0	0	0
10	246506	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER1a	ExonRegion	0	0.00	1.99	1.73	0.60	5.47	1.08	1.13
12	E1_Ac	KnownBoundary	0	1.70	2.78	3.91	0.00	7.61	1.05	0.00
13	E1_Ad	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	E1_Ae	KnownBoundary	0	1.00	0.00	0.75	0.00	0.00	0.00	0.69
15	ER1b	ExonRegion	0	3.37	8.23	8.50	5.68	27.94	5.59	4.87
16	E1_Af	KnownBoundary	0	35.03	36.49	57.91	53.97	188.62	30.44	36.52
17	ER1c	ExonRegion	0	9.99	11.54	17.95	11.85	57.50	13.49	8.10
18	ER1d	ExonRegion	0	11.53	12.15	20.32	14.96	63.17	17.16	10.79
19	ER1e	ExonRegion	0	26.08	30.90	47.46	44.58	135.09	25.44	30.61
20	ER1f	ExonRegion	0	108.80	65.17	135.76	111.47	499.30	64.50	98.07
21	E1_Da	KnownBoundary	0	2.49	8.88	6.70	13.74	5.35	3.06	5.55
22	E1a_E2a	KnownJunction	0	154.40	82.94	178.11	142.82	675.89	87.37	138.69
23	ER1g	ExonRegion	0	6.28	10.71	6.36	17.53	4.51	7.55	3.14
24	E1_Ag	KnownBoundary	0	16.36	28.14	25.90	33.46	11.71	25.03	9.29
25	ER1h	ExonRegion	0	8.96	25.56	20.37	29.57	11.92	27.74	10.93
26	E1b_E2a	KnownJunction	0	5.46	8.67	13.38	24.03	10.47	21.20	5.60
27	ER1i	ExonRegion	0	5.06	16.00	14.60	24.04	11.34	25.28	8.14
28	ER2a	ExonRegion	0	83.49	77.12	108.16	117.05	195.43	106.83	77.65
29	E2a_E3a	KnownJunction	0	50.45	101.20	86.28	139.06	87.12	143.75	62.79
30	ER3a	ExonRegion	0	134.82	99.95	210.57	189.02	186.10	131.46	122.78
31	E3a_E4a	KnownJunction	0	227.00	104.90	296.66	199.23	377.26	129.26	158.89
32	ER4a	ExonRegion	0	177.64	119.17	251.25	189.59	664.50	172.77	149.68
33	E4_Da	KnownBoundary	0	0.00	1.23	0.00	0.00	2.14	1.55	0.70
34	E4a_E5b	KnownJunction	0	91.18	118.54	141.79	142.85	629.83	157.90	103.77
35	E4_Db	KnownBoundary	0	1.85	1.34	0.00	0.00	0.00	0.00	0.85
36	E4b_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	E4_Dc	KnownBoundary	0	2.04	1.63	0.00	0.00	5.81	0.00	0.63
38	E4c_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER4b	ExonRegion	0	1.54	2.43	0.68	2.49	2.43	0.00	1.35
40	ER4c	ExonRegion	0	1.66	1.85	0.00	2.49	3.27	0.00	1.43
41	ER4d	ExonRegion	0	2.22	1.12	0.96	0.27	3.13	0.00	2.27
42	E4d_E5a	KnownJunction	0	0.00	0.00	0.89	0.00	0.00	0.00	0.80
43	E5a_E6b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	ER5a	ExonRegion	0	26.32	29.76	45.55	41.46	148.00	46.59	30.86
45	ER5b	ExonRegion	0	103.74	115.97	174.04	161.05	513.01	178.52	113.85
46	E5b_E6a	KnownJunction	0	80.26	81.05	138.76	115.46	344.23	118.00	75.24
47	ER5c	ExonRegion	0	93.09	115.24	168.16	151.73	349.54	152.72	101.55
48	ER6a	ExonRegion	0	118.71	98.03	226.73	161.33	318.62	157.69	116.37
49	E6a_E7a	KnownJunction	0	153.53	92.66	296.26	174.41	308.70	163.51	135.06
50	E6a_E8a	NovelJunction	0	2.57	9.12	0.75	11.05	4.36	9.81	2.21
51	E6a_E9a	NovelJunction	0	0.68	10.06	3.06	3.09	0.00	1.50	0.00
52	ER6b	ExonRegion	0	150.73	96.91	298.26	170.64	310.24	174.94	136.37
53	ER7a	ExonRegion	0	155.13	80.45	272.48	138.41	399.19	142.42	128.74
54	E7a_E8a	KnownJunction	0	108.45	72.61	209.07	120.28	362.62	95.84	95.50
55	ER8a	ExonRegion	0	167.85	86.25	283.31	149.39	389.88	133.62	137.94
56	E8a_E9a	KnownJunction	0	214.98	100.49	355.46	168.48	548.87	179.91	163.54
57	ER9a	ExonRegion	0	190.82	99.34	286.83	171.96	573.30	150.66	149.58
58	E9a_E10a	KnownJunction	0	185.83	71.67	257.73	111.86	669.96	88.71	126.09
59	I9	Intron	0	19.38	8.57	15.71	15.54	8.12	19.49	9.10
60	I9_SR1	SilentIntronRegion	0	21.32	8.56	13.74	13.03	8.19	14.43	8.43
61	I9_SR2	SilentIntronRegion	1	16.63	8.37	13.96	18.24	8.19	23.38	9.37
62	I9_AR2	ActiveIntronRegion	0	21.42	10.06	17.97	17.79	8.76	23.77	10.61
63	E10_Aa	NovelBoundary	1	22.93	11.03	18.67	17.93	15.24	33.71	11.29
64	ER10a	ExonRegion	0	196.34	116.35	256.46	164.32	493.57	146.05	157.44
65	E10a_E11a	KnownJunction	0	169.75	103.17	252.90	175.31	399.97	143.41	158.61
66	ER11a	ExonRegion	0	153.04	98.70	235.97	154.52	419.95	146.09	143.68
67	E11_Da	NovelBoundary	0	26.17	30.71	16.76	17.80	9.75	22.70	15.51
68	E11a_E12a	KnownJunction	0	136.94	105.37	214.55	153.50	573.21	150.53	117.35
69	I11	Intron	0	16.22	13.50	7.00	13.98	7.15	5.64	8.00
70	I11_AR1	ActiveIntronRegion	0	16.50	13.71	7.11	14.20	7.27	5.71	8.13
71	E12_Aa	NovelBoundary	0	16.46	19.83	3.66	24.08	11.71	4.18	9.14
72	ER12a	ExonRegion	0	140.24	121.18	202.61	156.45	558.21	129.49	157.80
73	E12a_E13a	KnownJunction	0	155.95	121.77	240.56	185.06	468.11	151.82	203.31
74	ER13a	ExonRegion	0	145.07	149.90	187.88	180.39	420.23	167.19	174.02
75	E13a_E14a	KnownJunction	0	133.89	137.45	146.58	176.69	392.77	149.06	153.60
76	ER14a	ExonRegion	0	168.33	129.48	200.82	171.65	482.15	163.78	195.36
77	E14_Da	KnownBoundary	0	118.72	65.07	115.67	44.10	272.30	73.89	67.53
78	E14a_E14b	KnownJunction	1	16.74	9.96	40.62	44.92	58.83	38.75	22.17
79	E14a_E14c	KnownJunction	1	14.85	11.59	23.37	7.42	39.40	30.26	37.58
80	ER14b	ExonRegion	0	112.81	61.99	116.55	70.66	254.99	63.91	64.83
81	E14_Ab	KnownBoundary	0	124.89	40.41	117.09	67.89	215.57	43.92	53.46
82	E14_Ac	KnownBoundary	0	80.11	64.94	103.48	99.91	180.27	88.09	65.16
83	ER14c	ExonRegion	0	136.37	73.20	156.98	128.20	242.25	104.06	85.31
84	ER14d	ExonRegion	0	107.75	50.98	141.18	75.52	183.02	89.53	71.17
85	E14_Db	KnownBoundary	1	37.85	8.67	39.85	19.97	14.27	36.61	15.32
86	ER14e	ExonRegion	1	23.53	4.95	25.45	8.49	26.16	18.93	8.63
87	E14_Dc	KnownBoundary	0	0.85	0.00	1.90	0.00	3.41	0.00	1.78
88	E14_Dd	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
89	E14_De	KnownBoundary	0	0.75	0.00	1.67	0.00	0.88	0.00	0.67
90	ER14f	ExonRegion	0	7.22	1.70	7.59	1.75	9.23	4.66	3.37
91	ER14g	ExonRegion	0	2.31	1.21	2.03	1.25	3.24	1.23	1.35
92	ER14h	ExonRegion	0	0.38	0.00	0.46	1.25	0.57	0.00	1.03