Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 WBP4 Gene 0 95.06 82.21 121.08 102.18 91.88 216.45 75.97 2 379487 Transcript 0 102.87 106.43 141.95 132.25 100.85 275.48 96.79 3 IG27 Intergenic 0 31.29 14.30 18.08 5.22 1.12 5.80 4.06 4 IG27_AR1 ActiveIntergenicRegion 0 26.09 11.13 11.99 2.43 0.00 6.55 3.21 5 IG27_SR1 SilentIntergenicRegion 0 22.62 3.43 14.18 1.04 0.00 0.88 4.52 6 IG27_SR2 SilentIntergenicRegion 0 30.55 2.14 16.16 1.06 0.19 1.47 4.09 7 IG27_AR2 ActiveIntergenicRegion 0 30.86 5.55 16.14 3.41 0.14 0.85 2.81 8 IG27_SR3 SilentIntergenicRegion 0 26.39 1.09 15.69 0.72 0.05 2.14 2.20 9 IG27_AR3 ActiveIntergenicRegion 0 17.36 4.91 10.35 0.74 0.00 4.19 1.51 10 IG27_SR4 SilentIntergenicRegion 0 20.20 4.78 14.34 1.90 0.41 1.16 3.00 11 IG27_AR6 ActiveIntergenicRegion 0 15.58 8.70 9.95 2.62 0.72 1.30 1.78 12 IG27_SR7 SilentIntergenicRegion 0 19.48 6.79 9.98 2.59 0.68 2.21 2.24 13 IG27_AR8 ActiveIntergenicRegion 0 43.46 16.67 24.73 5.12 1.22 9.68 3.30 14 IG27_AR9 ActiveIntergenicRegion 0 38.59 17.21 22.05 7.00 1.62 10.90 1.61 15 IG27_AR10 ActiveIntergenicRegion 0 16.66 13.01 12.01 4.36 0.76 7.00 1.12 16 IG27_AR11 ActiveIntergenicRegion 0 54.39 13.94 26.42 4.39 1.56 2.44 2.68 17 IG27_SR8 SilentIntergenicRegion 0 69.79 18.78 38.67 6.19 2.72 9.73 5.50 18 IG27_AR12 ActiveIntergenicRegion 0 56.51 20.14 31.57 9.38 2.50 8.25 7.14 19 IG27_SR9 SilentIntergenicRegion 0 41.43 27.02 22.45 11.21 1.37 8.89 5.37 20 IG27_AR13 ActiveIntergenicRegion 0 21.61 10.97 15.42 4.33 1.83 3.01 4.03 21 IG27_SR10 SilentIntergenicRegion 0 26.24 7.98 17.61 4.77 1.18 1.95 2.16 22 IG27_AR14 ActiveIntergenicRegion 0 52.91 20.49 31.50 8.80 1.36 7.94 6.01 23 IG27_SR11 SilentIntergenicRegion 0 25.55 5.59 15.50 2.24 0.98 1.76 3.50 24 IG27_AR15 ActiveIntergenicRegion 0 55.83 22.11 44.86 6.84 2.15 6.49 4.45 25 IG27_SR12 SilentIntergenicRegion 0 78.06 26.08 50.95 10.69 2.02 11.84 5.57 26 IG27_AR16 ActiveIntergenicRegion 0 34.14 22.96 22.43 9.59 0.56 5.24 4.45 27 IG27_SR13 SilentIntergenicRegion 0 14.06 22.62 12.42 9.38 0.50 8.26 2.46 28 IG27_AR17 ActiveIntergenicRegion 0 37.09 87.64 15.19 25.05 5.04 47.00 20.46 29 ER1a ExonRegion 0 50.49 66.75 66.26 69.23 58.80 141.05 47.20 30 E1a_E2a KnownJunction 0 10.85 69.49 11.73 57.38 1.91 95.41 20.26 31 I1_AR2 ActiveIntronRegion 0 16.33 10.24 11.59 20.62 0.83 34.25 2.01 32 ER2a ExonRegion 0 68.74 121.29 83.53 125.98 40.60 285.59 71.85 33 E2_Da NovelBoundary 1 26.34 23.88 24.10 13.68 3.92 14.82 4.57 34 E2a_E3a KnownJunction 0 162.43 128.65 189.03 184.79 83.57 456.00 130.49 35 I2 Intron 1 24.85 8.80 13.29 5.63 2.10 5.92 3.37 36 I2_AR1 ActiveIntronRegion 0 23.89 9.51 14.86 7.30 1.06 7.63 3.18 37 I2_SR1 SilentIntronRegion 0 25.92 8.05 11.63 3.86 3.22 4.10 3.58 38 ER3a ExonRegion 0 209.49 137.55 239.82 207.69 177.45 435.70 148.77 39 E3a_E4a KnownJunction 0 128.93 154.77 179.92 206.71 183.18 426.22 121.03 40 ER4a ExonRegion 0 105.59 145.33 134.71 176.38 102.13 351.00 96.73 41 E4a_E5a KnownJunction 0 147.07 161.52 164.17 161.35 115.89 350.09 114.19 42 ER5a ExonRegion 0 76.35 133.56 110.63 146.56 90.31 304.25 77.11 43 E5a_E6a KnownJunction 0 65.89 98.23 143.93 115.73 89.10 234.90 94.69 44 E5a_E7a NovelJunction 1 5.81 10.17 4.63 4.93 1.15 30.04 0.70 45 I5 Intron 0 19.53 11.34 17.63 6.39 3.73 7.95 3.55 46 I5_SR1 SilentIntronRegion 0 19.99 10.91 17.65 5.91 4.20 8.34 3.34 47 ER6a ExonRegion 0 67.90 108.33 143.59 127.43 116.14 241.57 113.09 48 E6a_E7a KnownJunction 0 57.88 93.68 115.39 109.12 111.97 207.75 93.91 49 ER7a ExonRegion 0 102.15 115.84 168.69 145.63 109.60 266.51 136.22 50 E7a_E8a KnownJunction 0 113.47 112.07 191.51 150.19 133.01 293.70 140.89 51 E7a_E9a NovelJunction 0 3.62 7.15 5.76 3.03 0.00 9.76 0.00 52 ER8a ExonRegion 0 88.81 94.16 137.96 121.84 86.99 259.34 104.59 53 E8a_E9a KnownJunction 0 72.94 57.64 121.59 79.21 102.17 202.39 82.88 54 ER9a ExonRegion 0 166.54 89.26 194.43 117.49 120.38 255.77 88.08 55 E9a_E10a KnownJunction 0 168.95 73.51 191.76 132.04 104.08 256.34 93.81 56 ER10a ExonRegion 0 90.16 60.49 108.49 78.05 88.89 170.60 63.17