Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DNAH10	Gene	0	0.52	0.79	1.31	1.35	0.18	3.05	0.41
2	339192	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	409039	Transcript	0	0	0	0	0	0	0	0
4	280576	Transcript	0	0	0	0	0	0	0	0
5	335003	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	IG22	Intergenic	0	4.73	5.73	20.39	15.40	22.26	12.04	11.10
7	IG22_AR1	ActiveIntergenicRegion	0	7.03	6.94	31.19	21.02	31.22	14.80	17.26
8	IG22_AR2	ActiveIntergenicRegion	0	6.38	10.25	25.82	23.94	32.62	21.18	13.69
9	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.74	0.00	0.00
10	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER2a	ExonRegion	0	0.00	0.00	0.19	0.00	0.00	0.00	0.00
12	E2a_E3a	KnownJunction	0	0.00	0.00	0.79	0.00	0.00	0.00	0.00
13	ER3a	ExonRegion	0	0.01	0.00	0.59	0.56	0.00	0.95	0.00
14	E3a_E4a	KnownJunction	0	0.00	0.00	0.89	1.68	0.00	0.00	0.00
15	ER4a	ExonRegion	0	1.04	0.00	1.68	1.24	0.33	0.83	0.00
16	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.88	0.00	0.00
17	ER5a	ExonRegion	0	0.38	0.00	1.33	0.00	0.05	0.02	0.00
18	E5a_E6a	KnownJunction	0	0.88	0.00	0.00	0.00	0.00	0.00	0.00
19	ER6a	ExonRegion	0	0.08	0.00	0.54	1.31	0.19	0.00	0.00
20	E6a_E7a	KnownJunction	0	0.00	0.00	1.24	2.25	0.00	0.00	0.00
21	ER7a	ExonRegion	0	0.73	0.00	1.24	1.35	0.26	0.00	0.00
22	E7a_E8a	KnownJunction	0	0.00	0.00	1.42	1.44	0.00	0.00	0.00
23	ER8a	ExonRegion	0	0.51	0.67	1.47	0.29	0.00	0.00	0.00
24	E8a_E9a	KnownJunction	0	0.00	1.47	0.89	0.00	0.00	0.00	0.00
25	ER9a	ExonRegion	0	0.00	0.16	0.43	0.00	0.00	0.00	0.00
26	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	ER10a	ExonRegion	0	0.00	1.39	0.18	0.48	0.06	1.35	0.26
28	E10a_E11a	KnownJunction	0	0.00	0.00	0.76	0.00	1.04	2.09	0.00
29	ER11a	ExonRegion	0	0.00	0.00	0.80	0.00	0.57	0.05	0.00
30	E11a_E12a	KnownJunction	0	0.00	0.00	1.51	0.00	0.00	0.00	0.00
31	ER12a	ExonRegion	0	0.28	0.00	0.91	0.00	0.00	0.00	0.00
32	E12a_E13a	KnownJunction	0	0.67	0.00	0.59	0.00	0.00	0.00	0.00
33	ER13a	ExonRegion	0	0.32	0.00	0.46	0.00	0.00	1.48	0.00
34	E13a_E14a	KnownJunction	0	1.03	0.00	0.00	0.00	0.00	0.00	0.00
35	ER14a	ExonRegion	0	0.14	0.00	0.39	0.00	0.00	0.54	0.00
36	E14a_E15a	KnownJunction	0	0.00	0.00	0.78	0.00	0.00	0.00	0.00
37	ER15a	ExonRegion	0	0.00	0.61	0.24	0.00	0.27	1.21	0.00
38	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER16a	ExonRegion	0	0.00	0.00	0.21	0.00	0.25	0.00	0.00
40	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	ER17a	ExonRegion	0	0.00	0.15	0.50	0.00	0.00	0.87	0.00
42	E17a_E18a	KnownJunction	0	0.00	1.50	0.00	0.00	0.00	0.00	0.00
43	ER18a	ExonRegion	0	0.00	0.74	0.98	0.00	0.51	1.22	0.00
44	E18a_E19a	KnownJunction	0	0.00	1.63	0.00	0.00	0.00	0.00	0.00
45	ER19a	ExonRegion	0	0.00	0.47	1.06	0.32	0.18	0.00	0.00
46	E19a_E20a	KnownJunction	0	0.00	0.00	2.24	1.68	0.00	0.00	0.00
47	ER19b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	ER20a	ExonRegion	0	0.00	0.00	0.95	0.24	0.26	0.00	0.32
49	E20a_E21a	KnownJunction	0	0.00	0.00	1.38	0.00	0.00	0.00	0.00
50	ER21a	ExonRegion	0	0.00	0.00	1.04	0.00	0.35	0.00	0.00
51	E21a_E22a	KnownJunction	0	0.00	0.00	1.70	0.00	0.00	0.00	0.00
52	ER22a	ExonRegion	0	0.57	0.00	1.09	0.00	0.00	0.00	0.00
53	E22a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	ER23a	ExonRegion	0	0.33	0.00	0.58	0.00	0.00	0.00	0.00
55	E23a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	ER24a	ExonRegion	0	0.00	0.00	0.93	0.45	0.00	0.88	0.00
57	E24a_E25a	KnownJunction	0	0.00	0.00	1.06	0.00	0.00	0.00	0.00
58	ER25a	ExonRegion	0	0.00	0.00	0.95	0.00	0.00	1.21	0.00
59	E25a_E26a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	ER26a	ExonRegion	0	0.00	0.00	1.06	0.00	0.00	0.00	0.03
61	E26_Ab	KnownBoundary	0	0.00	0.00	3.20	0.00	0.00	0.00	0.00
62	ER26b	ExonRegion	0	0.00	0.00	0.88	0.00	0.00	0.00	0.45
63	E26a_E27a	KnownJunction	0	0.00	0.00	0.89	0.00	0.00	0.00	0.89
64	ER27a	ExonRegion	0	0.00	0.00	0.17	0.00	0.00	0.00	0.22
65	E27a_E28a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
66	ER28a	ExonRegion	0	0.00	0.00	0.61	0.00	0.00	0.65	0.18
67	E28a_E29a	KnownJunction	0	0.00	0.00	0.68	0.00	0.00	4.88	0.62
68	ER29a	ExonRegion	0	0.00	0.00	0.49	1.49	0.00	1.82	0.27
69	E29a_E30a	KnownJunction	0	0.00	0.00	0.73	1.68	0.00	0.00	0.00
70	ER30a	ExonRegion	0	0.00	0.00	0.26	0.17	0.31	0.00	0.00
71	E30a_E31a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
72	ER31a	ExonRegion	0	0.00	0.00	0.00	0.77	0.22	0.00	0.00
73	E31a_E32a	KnownJunction	0	0.00	0.00	0.00	1.68	0.00	0.00	0.00
74	ER32a	ExonRegion	0	0.00	0.00	0.00	0.35	0.00	0.00	0.17
75	E32a_E33a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.89
76	ER33a	ExonRegion	0	0.00	0.00	0.35	0.62	0.00	0.00	0.19
77	E33a_E34a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
78	ER34a	ExonRegion	0	0.20	0.00	0.35	0.00	0.00	0.00	0.00
79	E34a_E35a	KnownJunction	0	0.00	0.00	0.79	0.00	0.00	0.00	0.00
80	ER35a	ExonRegion	0	0.00	0.00	0.24	0.00	0.00	0.03	0.00
81	E35a_E36a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
82	ER36a	ExonRegion	0	0.00	0.00	0.27	0.00	0.00	0.71	0.00
83	E36a_E37a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.63	0.00
84	ER37a	ExonRegion	0	0.00	0.00	0.00	0.00	0.35	0.39	0.00
85	E37a_E39a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
86	ER38a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
87	ER39a	ExonRegion	0	0.00	0.00	0.00	0.00	0.30	0.00	0.38
88	E39a_E40a	KnownJunction	0	0.00	0.00	0.00	0.00	0.92	0.00	0.64
89	ER40a	ExonRegion	0	0.00	0.00	0.42	0.00	0.56	0.00	0.31
90	E40a_E41a	KnownJunction	0	0.00	0.00	0.89	0.00	0.00	0.00	0.00
91	ER41a	ExonRegion	0	0.00	0.00	0.39	0.00	0.34	0.00	0.00
92	E41a_E42a	KnownJunction	0	0.00	0.00	1.28	0.00	0.00	0.00	0.00
93	ER42a	ExonRegion	0	0.00	0.04	0.88	0.70	0.00	0.00	0.00
94	E42a_E43a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
95	ER43a	ExonRegion	0	0.00	0.83	0.43	0.44	0.12	0.43	0.00
96	E43a_E44a	KnownJunction	0	0.00	0.00	0.66	0.00	1.13	0.00	0.00
97	ER44a	ExonRegion	0	0.00	0.00	0.34	0.00	0.12	0.00	0.00
98	E44a_E45a	KnownJunction	0	0.00	0.00	1.54	0.00	0.00	0.00	0.00
99	ER45a	ExonRegion	0	0.09	0.00	0.96	0.00	0.28	0.00	0.00
100	E45a_E46a	KnownJunction	0	0.82	0.00	1.64	0.00	0.00	0.00	0.00
101	ER46a	ExonRegion	0	0.32	0.00	0.23	0.00	0.00	0.00	0.00
102	E46a_E47a	KnownJunction	0	0.62	0.00	0.00	0.00	0.00	0.00	0.00
103	ER47a	ExonRegion	0	0.65	0.00	0.59	1.45	0.00	0.00	0.00
104	E47a_E48a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
105	ER48a	ExonRegion	0	0.00	0.00	0.60	1.47	0.00	0.00	0.00
106	E48a_E49a	KnownJunction	0	0.00	0.00	0.00	1.49	0.00	0.00	0.00
107	ER49a	ExonRegion	0	0.36	0.01	0.06	0.45	0.00	0.00	0.00
108	E49a_E50a	KnownJunction	0	1.03	0.00	0.57	1.11	0.00	0.00	0.00
109	ER50a	ExonRegion	0	0.70	0.54	0.39	0.49	0.00	1.66	0.00
110	E50a_E51a	KnownJunction	0	1.03	0.00	0.86	0.00	0.00	0.00	0.00
111	ER51a	ExonRegion	0	0.13	0.00	0.25	0.00	0.00	0.00	0.00
112	E51a_E52a	KnownJunction	0	0.00	0.00	0.79	0.00	0.00	0.00	0.00
113	ER52a	ExonRegion	0	0.00	0.00	0.50	1.65	0.00	0.00	0.30
114	E52a_E53a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
115	ER53a	ExonRegion	0	0.00	0.00	0.61	0.93	0.00	0.00	0.25
116	E53a_E54a	KnownJunction	0	0.00	0.00	0.89	0.00	0.00	0.00	0.00
117	ER54a	ExonRegion	0	0.00	0.00	0.51	0.00	0.00	0.00	0.00
118	E54a_E55a	KnownJunction	0	0.00	0.00	1.15	0.00	0.00	0.00	0.00
119	ER55a	ExonRegion	0	0.00	0.00	1.21	0.00	0.42	0.00	0.00
120	E55a_E56a	KnownJunction	0	0.00	0.00	1.29	0.00	0.00	0.00	0.00
121	ER56a	ExonRegion	0	0.00	0.00	0.81	0.00	0.00	0.00	0.00
122	E56a_E57a	KnownJunction	0	0.00	0.00	0.89	0.00	0.00	0.00	0.00
123	ER57a	ExonRegion	0	0.00	0.00	0.89	0.00	0.00	0.00	0.00
124	E57a_E58a	KnownJunction	0	0.00	0.00	1.35	0.00	0.00	0.00	0.00
125	ER58a	ExonRegion	0	0.00	0.00	1.50	0.00	0.00	1.23	0.67
126	E58a_E59a	KnownJunction	0	0.00	0.00	3.75	0.00	0.00	4.93	1.56
127	ER59a	ExonRegion	0	0.43	0.00	2.77	1.15	0.30	4.04	0.28
128	E59a_E60a	KnownJunction	0	0.00	0.00	2.96	1.54	0.00	1.66	0.59
129	ER60a	ExonRegion	0	0.00	0.00	1.15	1.02	0.19	0.70	0.20
130	E60a_E61a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
131	ER61a	ExonRegion	0	0.05	0.00	0.47	0.49	0.19	2.37	0.69
132	E61a_E62a	KnownJunction	0	0.75	0.00	0.82	1.14	0.00	5.76	0.00
133	ER62a	ExonRegion	0	0.61	0.00	0.93	0.55	0.00	2.24	0.33
134	E62a_E63a	KnownJunction	0	0.85	0.00	0.73	0.00	0.00	1.34	0.00
135	ER63a	ExonRegion	0	0.05	0.00	1.43	0.34	0.36	2.23	0.00
136	E63a_E64a	KnownJunction	0	0.00	0.00	0.55	0.00	1.18	0.00	0.00
137	E64_Aa	NovelBoundary	0	0.00	0.00	0.00	1.68	0.00	9.06	0.00
138	ER64a	ExonRegion	0	0.00	0.40	0.28	2.14	0.26	3.67	0.00
139	E64a_E65a	KnownJunction	0	0.00	0.00	1.41	1.22	2.10	0.00	0.00
140	ER65a	ExonRegion	0	0.00	0.01	0.65	1.64	0.16	6.55	0.39
141	E65a_E66a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.66	0.00
142	ER66a	ExonRegion	0	0.00	2.53	0.19	0.01	0.18	5.42	2.16
143	E66a_E67a	KnownJunction	0	0.00	0.00	0.72	0.00	1.18	1.66	0.89
144	ER67a	ExonRegion	0	0.00	0.60	1.65	0.78	0.41	1.49	0.50
145	E67a_E68a	KnownJunction	0	0.00	0.00	1.90	1.41	0.00	0.00	0.64
146	ER68a	ExonRegion	0	0.38	0.00	1.61	0.44	0.27	0.00	0.49
147	E68a_E69a	KnownJunction	0	0.00	0.00	0.62	0.00	0.00	0.00	0.89
148	I68	Intron	0	2.06	4.04	1.77	5.20	0.26	17.25	2.81
149	I68_SR1	SilentIntronRegion	0	1.91	2.75	1.21	3.79	0.10	9.99	1.88
150	I68_AR1	ActiveIntronRegion	0	0.72	9.00	2.52	9.94	0.00	39.73	3.75
151	I68_AR2	ActiveIntronRegion	0	2.67	6.20	2.96	7.72	0.70	30.31	4.83
152	E69_Aa	NovelBoundary	0	8.19	11.06	11.67	19.34	1.18	45.85	6.79
153	ER69a	ExonRegion	0	5.01	5.50	8.03	16.96	1.55	39.65	3.55
154	E69_Da	NovelBoundary	0	10.87	16.39	12.76	19.70	2.24	57.19	10.33
155	E69a_E70a	KnownJunction	0	0.75	0.00	0.69	0.00	0.00	0.00	0.83
156	I69	Intron	0	5.43	11.97	7.79	12.79	1.18	28.25	4.43
157	I69_SR1	SilentIntronRegion	0	5.50	11.18	8.97	14.86	1.33	30.51	5.23
158	I69_AR1	ActiveIntronRegion	0	6.38	15.69	7.57	15.23	1.69	35.77	5.84
159	I69_SR2	SilentIntronRegion	0	5.04	12.28	5.85	8.35	0.75	21.84	2.54
160	E70_Aa	NovelBoundary	0	3.97	11.35	5.39	14.85	0.00	41.51	0.54
161	ER70a	ExonRegion	0	0.14	0.01	0.40	0.83	0.21	0.56	0.41
162	E70_Da	NovelBoundary	0	3.15	12.93	5.26	13.84	0.00	45.18	4.93
163	E70a_E71a	KnownJunction	0	0.00	0.00	0.89	2.93	0.00	0.00	0.00
164	E71_Aa	NovelBoundary	0	6.23	15.21	6.02	19.40	2.10	44.57	7.72
165	ER71a	ExonRegion	0	0.00	0.00	0.35	1.91	0.00	1.52	0.01
166	E71_Da	NovelBoundary	0	4.04	12.64	2.01	13.52	2.19	29.18	3.68
167	E71a_E72a	KnownJunction	0	0.00	0.00	1.24	0.00	0.00	2.63	0.00
168	E72_Aa	NovelBoundary	0	7.09	33.81	12.44	15.41	1.15	46.71	13.11
169	ER72a	ExonRegion	0	0.00	0.05	0.50	0.66	0.43	0.89	0.00
170	E72_Da	NovelBoundary	0	4.81	25.69	3.35	16.44	0.00	13.96	10.99
171	E72a_E73a	KnownJunction	0	0.00	0.00	1.57	1.52	0.00	2.57	0.00
172	E73_Aa	NovelBoundary	0	6.69	4.99	8.46	13.22	1.18	31.44	5.69
173	ER73a	ExonRegion	0	1.70	3.67	3.54	3.49	0.17	12.63	2.05
174	E73_Da	NovelBoundary	0	2.45	5.94	5.49	1.68	1.18	33.31	2.28
175	E73a_E74a	KnownJunction	0	0.00	0.00	0.63	0.00	1.04	4.07	0.00
176	Ix	Intron	0	4.14	10.32	3.68	6.76	0.46	17.71	2.52
177	Ix_AR1	ActiveIntronRegion	0	5.61	12.86	4.67	7.73	0.38	17.79	3.25
178	Ix_SR1	SilentIntronRegion	0	0.00	3.21	0.90	4.08	0.70	17.75	0.45
179	E74_Aa	NovelBoundary	0	6.93	11.17	1.18	8.34	0.00	16.86	1.46
180	ER74a	ExonRegion	0	0.45	7.68	2.14	5.74	0.39	19.40	2.33
181	E74_Da	NovelBoundary	0	3.17	13.82	4.90	11.57	2.35	36.82	2.51
182	E74a_E75a	KnownJunction	0	0.00	0.00	0.88	0.00	0.00	1.61	0.00
183	Ix	Intron	0	5.13	11.33	6.19	8.09	1.01	31.23	4.06
184	Ix_SR1	SilentIntronRegion	0	6.27	14.22	7.12	9.38	1.15	35.84	5.21
185	Ix_AR1	ActiveIntronRegion	0	1.96	3.16	3.69	4.52	0.65	18.64	0.79
186	E75_Aa	NovelBoundary	0	10.75	21.94	6.29	18.04	0.97	57.99	8.47
187	ER75a	ExonRegion	0	5.49	7.40	6.91	9.36	0.74	28.48	2.64
188	E75_Da	NovelBoundary	0	7.33	13.79	7.60	10.02	0.00	50.30	1.71
189	E75a_E76a	KnownJunction	0	0.00	0.00	1.44	0.00	0.00	2.84	0.00
190	Ix	Intron	0	1.84	2.98	3.51	4.04	0.00	12.95	1.10
191	Ix_AR1	ActiveIntronRegion	0	1.87	3.04	3.58	4.11	0.00	13.16	1.13
192	E76_Aa	NovelBoundary	0	3.59	6.80	4.87	2.60	0.88	35.48	4.23
193	ER76a	ExonRegion	0	4.74	4.92	8.25	9.56	0.25	26.69	3.25
194	E76_Da	NovelBoundary	0	4.21	3.70	4.53	7.59	0.00	36.85	3.74
195	E76a_E77a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	4.07	0.70
196	Ix_SR1	SilentIntronRegion	0	2.91	2.99	4.21	4.34	0.79	23.70	3.33
197	E77_Aa	NovelBoundary	0	2.80	10.85	5.69	10.73	0.97	15.46	3.04
198	ER77a	ExonRegion	0	1.15	7.66	2.05	8.54	0.00	9.06	0.63
199	E77_Da	NovelBoundary	0	1.69	6.52	4.43	8.99	0.00	20.50	3.84
200	E77a_E78a	KnownJunction	0	0.00	0.00	1.98	2.98	0.00	1.66	0.00
201	Ix	Intron	0	2.47	7.99	3.99	8.04	0.59	18.99	3.51
202	Ix_AR1	ActiveIntronRegion	0	2.29	7.70	2.89	8.49	0.78	19.88	3.25
203	Ix_SR1	SilentIntronRegion	0	2.72	8.44	5.45	7.51	0.35	17.94	3.87
204	E78_Aa	NovelBoundary	0	0.70	21.78	2.70	12.06	0.00	28.84	6.25
205	ER78a	ExonRegion	0	0.02	0.00	1.80	0.50	0.28	1.01	0.35
206	E78_Da	NovelBoundary	0	5.71	17.16	3.22	17.12	0.90	35.35	1.40
207	E78a_E79a	KnownJunction	0	0.00	0.00	4.48	1.06	0.00	0.00	0.00
208	I78	Intron	0	2.50	10.29	2.79	10.83	0.47	21.23	3.66
209	I78_SR1	SilentIntronRegion	0	2.52	10.46	2.83	11.01	0.48	21.58	3.72
210	E79_Aa	NovelBoundary	0	3.87	18.10	5.04	4.44	0.00	32.11	3.40
211	ER79a	ExonRegion	0	6.03	7.19	9.88	8.10	0.43	21.56	3.99
212	IG23	Intergenic	0	3.20	10.66	7.10	12.40	0.11	26.85	7.56
213	IG23_AR1	ActiveIntergenicRegion	0	2.66	12.25	7.18	12.24	0.17	27.19	7.64
214	IG23_SR1	SilentIntergenicRegion	0	4.69	8.01	7.83	14.55	0.00	28.85	8.46
215	IG23_AR2	ActiveIntergenicRegion	0	2.36	3.20	1.42	1.50	0.00	9.93	0.74