Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	EP400	Gene	0	56.49	58.02	79.83	82.93	132.22	44.08	72.92
2	389562	Transcript	0	0	0	0	0	0	0	0
3	389561	Transcript	0	0	0	0	0	0	0	0
4	332482	Transcript	1	15.29	41.06	13.78	35.25	14.71	13.56	42.97
5	330386	Transcript	0	7.33	4.54	7.16	6.96	2.26	2.73	3.37
6	333577	Transcript	0	8.41	8.79	17.48	12.19	11.15	8.07	15.20
7	ER1a	ExonRegion	0	1.12	7.16	1.39	15.89	1.89	4.19	1.31
8	E1a_E2a	KnownJunction	1	1.74	12.58	2.80	18.50	2.14	2.87	0.00
9	ER2a	ExonRegion	0	18.43	36.53	34.37	47.97	24.00	22.15	28.83
10	E2a_E3a	KnownJunction	1	5.62	11.74	24.43	14.09	9.22	12.35	12.12
11	E2a_E4a	KnownJunction	1	14.60	20.91	44.15	41.02	35.89	13.72	25.71
12	E2a_E4b	KnownJunction	1	39.29	44.90	88.61	66.51	59.59	13.13	52.91
13	ER3a	ExonRegion	0	15.00	12.26	18.61	12.86	13.56	8.80	18.70
14	E3a_E4b	KnownJunction	0	4.61	2.36	9.40	9.62	10.67	3.06	14.76
15	E4_Ab	NovelBoundary	1	10.63	0.00	25.56	0.00	1.13	0.00	0.66
16	ER4a	ExonRegion	0	29.97	34.93	66.72	62.35	52.44	17.47	43.85
17	ER4b	ExonRegion	1	50.28	76.74	85.46	90.25	72.11	26.32	66.85
18	E4a_E5a	KnownJunction	1	9.68	9.59	22.71	24.90	31.84	12.89	3.96
19	E4a_E6a	KnownJunction	1	15.29	41.06	13.78	35.25	14.71	13.56	42.97
20	ER5a	ExonRegion	1	18.49	11.00	43.50	28.92	49.24	9.91	6.26
21	E5a_E6a	KnownJunction	1	14.87	7.25	54.81	36.11	51.09	6.62	0.76
22	ER6a	ExonRegion	0	28.81	64.47	49.80	88.85	53.88	27.44	61.82
23	E6a_E7a	KnownJunction	0	30.01	52.36	34.79	81.49	44.98	26.37	64.18
24	ER7a	ExonRegion	0	25.75	40.83	33.10	62.50	44.84	24.54	48.57
25	E7a_E8a	KnownJunction	0	29.06	51.78	47.06	65.43	56.87	25.19	54.03
26	ER8a	ExonRegion	0	29.15	51.00	45.80	55.76	50.24	27.87	53.68
27	E8a_E9a	KnownJunction	0	34.13	38.75	58.60	50.42	74.05	28.70	52.44
28	ER9a	ExonRegion	0	53.57	45.35	70.76	65.26	76.01	24.90	51.36
29	E9a_E10a	KnownJunction	0	78.48	45.98	108.96	88.32	106.92	32.35	63.76
30	E9a_E11a	NovelJunction	0	0.00	0.00	0.00	8.48	0.00	2.79	0.00
31	ER10a	ExonRegion	0	101.87	44.77	145.59	97.06	118.00	33.16	75.59
32	E10a_E11a	KnownJunction	1	90.36	51.89	140.86	108.34	111.78	26.72	74.65
33	ER11a	ExonRegion	0	92.09	50.20	124.54	101.05	116.15	29.08	85.36
34	E11a_E12a	KnownJunction	0	76.69	35.81	83.71	86.45	102.38	32.56	67.66
35	ER12a	ExonRegion	0	78.47	37.28	95.90	82.19	113.74	34.39	66.24
36	E12a_E13a	KnownJunction	0	65.11	31.39	94.74	71.52	97.26	32.24	63.12
37	ER13a	ExonRegion	1	61.01	49.90	97.75	73.00	127.45	18.08	73.06
38	E13a_E14a	KnownJunction	1	38.17	49.68	62.63	65.40	106.78	16.91	59.23
39	ER14a	ExonRegion	0	32.42	55.59	57.62	84.65	80.39	32.95	62.83
40	E14a_E15a	KnownJunction	0	37.00	68.12	67.81	92.68	85.85	32.45	74.57
41	ER15a	ExonRegion	0	39.17	74.37	79.85	91.55	103.53	32.70	71.53
42	E15a_E16a	KnownJunction	0	51.81	60.95	90.43	93.55	103.74	39.96	75.37
43	ER16a	ExonRegion	0	90.84	83.66	134.57	110.15	155.96	41.59	80.21
44	E16_Da	NovelBoundary	1	52.91	3.02	66.87	0.00	1.04	0.00	2.16
45	E16a_E17a	KnownJunction	0	105.61	90.35	146.10	122.48	125.43	35.32	80.34
46	ER17a	ExonRegion	0	95.55	79.23	124.68	116.61	155.05	33.44	78.47
47	E17a_E18a	KnownJunction	0	84.99	65.70	96.91	87.78	133.89	25.62	81.89
48	ER18a	ExonRegion	0	63.77	80.57	98.01	115.09	129.70	34.16	86.80
49	E18a_E19a	KnownJunction	0	58.23	97.65	117.89	140.41	151.53	39.77	86.10
50	ER19a	ExonRegion	0	66.31	80.75	119.52	109.43	141.43	53.32	92.53
51	E19a_E20a	KnownJunction	0	74.99	87.27	133.49	102.62	180.83	72.81	93.77
52	ER20a	ExonRegion	0	90.74	91.53	150.11	123.45	162.01	69.52	115.10
53	E20a_E21a	KnownJunction	0	79.34	71.22	139.54	116.63	114.41	67.00	98.21
54	ER21a	ExonRegion	0	78.16	68.60	126.05	111.33	122.79	51.91	95.20
55	E21a_E22a	KnownJunction	0	86.77	64.81	119.63	87.15	179.67	43.01	113.53
56	ER22a	ExonRegion	0	62.04	69.29	98.76	87.50	91.97	48.58	100.12
57	E22a_E23a	KnownJunction	0	55.54	60.50	85.46	72.28	67.98	38.56	78.74
58	ER23a	ExonRegion	0	35.68	48.32	45.62	61.90	53.24	27.51	63.53
59	E23a_E24a	KnownJunction	0	14.95	42.45	31.11	40.85	30.29	23.72	39.33
60	E23a_E25a	KnownJunction	0	7.33	4.54	7.16	6.96	2.26	2.73	3.37
61	ER24a	ExonRegion	1	5.22	18.84	8.01	21.08	18.34	12.41	18.61
62	E24a_E25a	KnownJunction	0	10.82	22.93	14.41	29.15	11.64	17.42	20.52
63	ER25a	ExonRegion	0	17.60	28.80	29.76	51.65	37.42	28.56	32.27
64	E25a_E26a	KnownJunction	1	13.84	33.36	29.50	49.09	49.61	32.24	40.93
65	ER26a	ExonRegion	0	19.58	24.56	30.67	39.95	47.35	25.14	35.35
66	E26a_E27a	KnownJunction	0	16.44	16.58	27.78	41.86	50.49	10.51	30.04
67	ER27a	ExonRegion	0	20.33	24.40	32.61	57.44	45.80	19.69	37.45
68	E27a_E28a	KnownJunction	0	27.72	35.89	34.13	54.21	57.15	19.72	35.69
69	ER28a	ExonRegion	0	29.31	45.46	52.69	77.59	76.44	28.94	54.43
70	E28a_E29a	KnownJunction	0	23.67	59.74	54.43	95.09	99.36	26.77	60.65
71	ER29a	ExonRegion	0	35.72	49.38	53.53	68.42	97.72	31.42	57.53
72	E29a_E30a	KnownJunction	0	41.24	62.34	78.10	83.98	137.72	44.65	77.48
73	ER30a	ExonRegion	0	84.23	80.02	137.70	120.60	206.56	52.53	105.88
74	E30a_E31a	KnownJunction	0	74.29	106.03	152.76	114.03	227.23	41.97	112.93
75	ER31a	ExonRegion	0	83.96	101.32	157.83	122.73	200.97	57.14	115.05
76	E31a_E32a	KnownJunction	0	117.30	91.00	193.35	126.81	300.63	60.62	121.53
77	ER32a	ExonRegion	0	94.05	91.28	175.12	128.83	211.24	52.86	119.38
78	E32a_E33a	KnownJunction	0	70.97	78.18	145.50	104.54	189.86	84.87	112.30
79	E33_Aa	NovelBoundary	1	31.79	7.28	62.76	1.27	2.05	0.00	2.42
80	ER33a	ExonRegion	0	91.16	83.12	179.97	104.24	232.09	64.97	114.21
81	E33a_E34a	KnownJunction	0	72.05	81.10	139.85	108.99	176.65	52.42	92.98
82	ER34a	ExonRegion	0	63.54	89.81	133.59	118.33	186.07	65.46	103.18
83	E34a_E35a	KnownJunction	0	72.07	91.74	123.63	124.86	217.16	60.67	107.74
84	E35_Aa	NovelBoundary	1	31.59	1.63	53.82	0.00	65.72	1.58	1.46
85	ER35a	ExonRegion	0	84.13	90.75	152.65	141.86	226.61	74.46	136.82
86	E35a_E36a	KnownJunction	0	82.62	112.97	146.95	152.50	148.60	82.25	169.02
87	ER36a	ExonRegion	0	45.61	80.72	80.44	120.69	140.18	60.86	102.60
88	E36a_E37a	KnownJunction	0	53.71	83.91	71.21	135.18	141.08	60.38	103.09
89	ER37a	ExonRegion	0	74.04	96.05	104.42	157.67	229.35	70.97	134.48
90	E37a_E38a	KnownJunction	0	66.28	72.98	81.54	132.37	252.91	52.69	101.19
91	ER38a	ExonRegion	0	49.83	77.40	66.12	116.94	140.01	58.24	87.31
92	E38a_E39a	KnownJunction	0	76.39	76.55	81.09	107.66	124.30	36.66	83.81
93	E39_Aa	NovelBoundary	1	20.11	1.26	22.96	2.84	0.00	3.67	0.54
94	ER39a	ExonRegion	0	86.76	96.67	118.26	138.36	206.84	65.39	110.18
95	E39a_E40a	KnownJunction	0	114.14	99.15	172.20	144.61	279.12	83.99	145.19
96	ER40a	ExonRegion	0	101.14	131.46	170.74	184.21	268.90	103.98	187.06
97	E40a_E41a	KnownJunction	0	90.46	133.56	155.83	177.15	247.13	97.77	155.90
98	ER41a	ExonRegion	0	80.52	133.74	154.11	163.24	256.26	97.78	162.02
99	E41a_E42a	KnownJunction	0	89.89	119.59	145.60	138.71	167.62	86.00	160.63
100	ER42a	ExonRegion	0	59.06	107.40	100.19	134.93	123.55	65.82	105.11
101	E42a_E43a	KnownJunction	0	29.93	79.55	58.63	105.22	120.38	41.03	53.33
102	ER43a	ExonRegion	0	28.49	71.91	59.32	78.31	90.20	38.08	57.77
103	E43a_E44a	KnownJunction	1	27.96	76.03	71.29	76.02	75.98	36.18	79.14
104	ER44a	ExonRegion	1	11.45	34.36	22.56	37.10	44.69	20.71	35.84
105	E44a_E45a	KnownJunction	1	13.97	47.97	32.38	64.37	20.91	28.54	48.63
106	ER45a	ExonRegion	0	19.96	59.63	33.21	91.84	57.87	39.66	52.52
107	E45a_E46a	KnownJunction	0	28.12	60.27	38.63	96.96	84.58	41.41	64.08
108	ER46a	ExonRegion	0	27.73	69.79	39.17	90.45	70.56	42.49	67.53
109	E46a_E47a	KnownJunction	0	30.26	63.10	40.90	117.55	83.77	52.88	70.61
110	ER47a	ExonRegion	0	34.62	62.71	41.13	84.53	68.78	43.94	60.08
111	E47a_E48a	KnownJunction	0	36.92	59.66	54.95	84.23	64.55	48.13	55.84
112	ER48a	ExonRegion	0	19.78	39.09	24.70	50.45	38.85	27.25	33.81
113	E48a_E49a	KnownJunction	1	34.05	58.87	24.69	71.55	56.48	55.15	71.41
114	ER49a	ExonRegion	0	22.83	49.57	28.54	57.46	62.52	34.36	54.88
115	E49a_E50a	KnownJunction	0	19.83	42.19	20.97	48.09	22.22	30.10	41.73
116	ER50a	ExonRegion	0	39.27	53.08	40.98	74.84	114.42	40.30	71.52
117	E50a_E51a	KnownJunction	0	78.88	74.82	72.41	102.43	152.43	46.55	113.00
118	E51_Aa	NovelBoundary	1	23.37	0.00	21.50	4.04	0.00	1.31	4.37
119	ER51a	ExonRegion	0	60.28	78.97	58.44	98.06	129.85	51.51	101.64
120	E51a_E52a	KnownJunction	0	73.24	56.85	66.41	83.14	183.64	44.41	99.32
121	E51a_E53a	NovelJunction	0	1.03	6.31	3.54	15.50	0.00	11.23	5.40
122	ER52a	ExonRegion	0	72.92	73.26	76.82	102.76	169.36	51.48	90.98
123	E52a_E53a	KnownJunction	0	84.00	62.13	84.67	95.33	247.08	51.24	102.25
124	ER53a	ExonRegion	0	69.12	69.56	84.03	77.57	171.89	68.22	106.77
125	E53a_E54a	KnownJunction	0	49.65	67.04	57.55	70.14	109.62	62.23	90.80
126	ER54a	ExonRegion	0	91.84	53.90	105.36	86.05	239.17	62.25	88.46