Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	APAF1	Gene	0	47.94	19.50	21.06	12.06	73.28	10.62	13.15
2	359972	Transcript	0	18.56	9.24	10.70	1.27	33.46	2.53	6.09
3	333991	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	339433	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	357310	Transcript	0	0	0	0	0	0	0	0
6	ER1a	ExonRegion	0	19.67	14.39	6.41	6.82	13.60	5.32	4.92
7	E1a_E2a	KnownJunction	1	95.35	25.59	26.76	16.77	52.01	21.49	12.14
8	ER2a	ExonRegion	0	121.49	54.29	43.55	28.71	84.18	23.44	18.45
9	E2a_E3a	KnownJunction	1	143.62	45.61	55.30	11.27	91.70	30.98	10.92
10	ER3a	ExonRegion	0	77.62	36.45	33.09	13.05	76.90	18.35	15.14
11	E3_Da	NovelBoundary	1	6.96	2.05	9.69	0.00	3.00	2.89	0.00
12	E3a_E4a	KnownJunction	1	30.16	37.36	15.53	7.45	42.95	5.82	7.42
13	ER4a	ExonRegion	0	37.99	30.10	19.28	10.93	51.93	10.67	10.65
14	E4a_E5a	KnownJunction	0	21.80	19.91	19.86	8.21	37.74	11.55	8.99
15	ER5a	ExonRegion	0	29.13	21.27	23.33	10.80	39.76	8.20	10.85
16	E5a_E6a	KnownJunction	1	33.36	17.71	25.16	8.64	47.74	2.28	12.10
17	ER6a	ExonRegion	0	28.07	14.63	22.67	7.28	40.46	3.12	12.63
18	E6a_E7a	KnownJunction	1	38.99	15.74	22.92	1.44	47.63	2.25	10.76
19	ER7a	ExonRegion	1	58.10	22.23	30.52	5.17	60.63	5.34	12.82
20	E7a_E8a	KnownJunction	0	38.85	15.03	29.93	3.55	57.01	9.76	10.68
21	E7a_E27a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	E8_Aa	NovelBoundary	1	19.76	5.99	11.93	1.03	3.90	2.71	1.78
23	ER8a	ExonRegion	0	42.42	23.61	26.82	15.77	58.57	6.46	15.49
24	E8a_E9a	KnownJunction	0	44.25	13.90	21.67	19.15	54.04	7.61	13.87
25	ER9a	ExonRegion	0	42.94	22.21	30.02	13.94	58.73	6.73	19.09
26	E9a_E10a	KnownJunction	1	50.89	22.09	29.52	4.90	47.88	9.27	19.19
27	ER10a	ExonRegion	0	47.81	25.73	21.61	9.11	67.16	10.10	18.46
28	E10a_E11a	KnownJunction	0	62.17	19.05	20.26	12.76	71.28	12.41	15.35
29	ER11a	ExonRegion	0	54.59	20.51	22.99	13.16	76.32	10.77	13.31
30	E11a_E12a	KnownJunction	0	72.12	22.83	24.99	12.35	77.64	10.72	18.97
31	ER12a	ExonRegion	0	51.84	24.69	26.08	7.87	69.74	15.77	12.43
32	E12a_E13a	KnownJunction	0	45.31	19.55	28.47	6.85	67.13	11.77	10.39
33	ER13a	ExonRegion	0	30.82	15.73	20.47	11.54	67.10	3.44	14.70
34	E13a_E14a	KnownJunction	1	26.94	13.37	23.15	7.02	54.89	1.21	10.65
35	ER14a	ExonRegion	0	30.99	22.10	20.99	13.29	74.47	6.37	13.04
36	E14a_E15a	KnownJunction	1	39.62	22.33	25.00	9.59	112.31	4.05	13.63
37	ER15a	ExonRegion	0	64.89	21.12	29.83	18.21	119.18	10.93	16.71
38	E15a_E16a	KnownJunction	0	86.32	20.86	27.39	24.35	117.50	12.54	13.74
39	ER16a	ExonRegion	1	139.02	31.12	46.83	27.72	182.82	16.56	17.64
40	E16a_E17a	KnownJunction	1	94.72	26.51	35.02	21.19	160.08	9.00	10.88
41	ER17a	ExonRegion	0	74.51	21.81	26.04	12.89	114.37	5.65	12.41
42	E17a_E18a	KnownJunction	0	20.18	4.12	14.92	1.41	35.36	2.95	5.70
43	E17a_E19a	KnownJunction	0	26.92	8.14	9.44	2.68	47.56	2.97	7.77
44	ER18a	ExonRegion	0	25.05	9.31	10.36	2.41	29.67	1.82	8.06
45	E18a_E19a	KnownJunction	1	10.46	14.29	6.83	0.00	35.34	2.81	4.50
46	ER19a	ExonRegion	0	46.70	20.97	20.52	9.13	102.90	9.34	17.21
47	E19a_E20a	KnownJunction	1	45.38	24.17	16.55	10.59	87.39	4.98	20.26
48	ER20a	ExonRegion	0	44.70	23.11	21.20	11.73	96.42	12.11	22.41
49	E20a_E21a	KnownJunction	0	39.17	12.66	23.96	14.93	102.95	9.81	13.50
50	ER21a	ExonRegion	0	38.08	21.31	16.90	14.31	87.79	9.27	19.73
51	E21a_E22a	KnownJunction	0	35.43	19.15	16.02	14.52	68.40	5.79	16.74
52	ER22a	ExonRegion	0	33.23	17.04	17.32	13.78	86.22	12.33	16.36
53	E22a_E23a	KnownJunction	1	35.95	25.59	18.98	5.80	87.30	8.92	15.52
54	E23_Aa	NovelBoundary	1	20.40	1.08	8.23	0.00	0.00	0.00	0.60
55	ER23a	ExonRegion	0	47.00	15.15	20.77	11.73	84.79	8.01	13.95
56	E23a_E24a	KnownJunction	0	53.47	20.07	16.81	16.23	96.48	16.19	13.08
57	ER24a	ExonRegion	0	68.63	24.95	23.57	13.85	109.50	16.14	18.01
58	E24a_E25a	KnownJunction	0	48.52	27.11	22.19	11.92	105.88	13.94	12.68
59	E24a_E26a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	ER25a	ExonRegion	0	46.44	24.85	18.05	14.28	88.14	13.89	13.73
61	E25a_E26a	KnownJunction	0	34.15	23.64	19.53	11.00	96.71	7.26	9.59
62	ER26a	ExonRegion	0	37.83	22.06	19.73	13.55	87.95	10.89	12.82
63	E26a_E27a	KnownJunction	0	56.23	20.05	29.72	8.83	89.86	9.51	19.29
64	ER27a	ExonRegion	0	46.38	14.66	18.89	11.69	77.32	11.78	12.47