Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CSAD	Gene	0	41.80	28.02	26.61	16.47	17.13	17.52	31.81
2	379850	Transcript	0	0.99	0.67	0.83	0.15	1.40	0.73	0.52
3	379846	Transcript	0	0.62	0.39	0.51	0.05	0.34	0.03	0.43
4	308926	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	379843	Transcript	0	0	0	0	0	0	0	0
6	267085	Transcript	0	0	0	0	0	0	0	0
7	IG43	Intergenic	0	7.24	3.62	9.05	4.09	13.25	3.49	7.40
8	IG43_AR2	ActiveIntergenicRegion	0	31.70	16.66	45.72	18.65	67.77	16.84	31.14
9	ER1a	ExonRegion	0	5.37	4.04	5.08	1.04	8.96	5.14	3.38
10	E1_Da	NovelBoundary	0	23.85	5.73	18.60	2.19	52.81	2.49	14.09
11	ER2a	ExonRegion	0	0.44	0.16	0.02	0.04	0.05	0.00	0.04
12	I2	Intron	0	12.25	6.82	10.91	7.01	4.82	5.72	9.23
13	I2_AR1	ActiveIntronRegion	0	12.30	6.85	10.94	7.03	4.84	5.74	9.26
14	E3_Aa	NovelBoundary	0	23.77	14.84	14.73	8.61	8.78	7.05	20.18
15	ER3a	ExonRegion	0	22.02	8.94	11.22	6.40	7.47	6.48	16.10
16	E3_Da	NovelBoundary	1	19.21	5.33	8.58	9.59	12.36	2.28	19.61
17	E3a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.66	0.89
18	I3	Intron	0	25.61	9.33	24.12	4.00	9.35	2.89	17.93
19	I3_AR2	ActiveIntronRegion	0	32.66	8.48	28.55	2.33	10.83	2.45	11.94
20	I3_SR2	SilentIntronRegion	1	35.38	12.50	33.93	6.21	12.13	3.46	27.55
21	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	E4_Da	NovelBoundary	0	94.57	42.82	58.88	62.34	37.53	53.17	43.75
23	E4a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	ER7a	ExonRegion	0	1.54	0.64	0.72	0.00	0.81	0.00	0.28
30	I7	Intron	1	31.28	13.83	25.69	9.53	15.92	6.58	27.96
31	I7_SR1	SilentIntronRegion	0	13.06	4.40	9.60	0.85	6.17	1.95	5.83
32	I7_AR1	ActiveIntronRegion	1	39.60	17.97	32.90	13.11	20.32	8.60	37.35
33	E8_Aa	NovelBoundary	0	48.92	17.02	23.83	15.52	8.74	9.46	25.24
34	E8_Ab	NovelBoundary	0	14.09	3.42	9.51	1.57	7.81	2.95	6.55
35	ER8a	ExonRegion	1	13.83	5.77	5.25	0.62	7.49	1.84	3.88
36	ER8b	ExonRegion	1	32.14	16.10	14.68	2.85	15.66	2.80	11.17
37	E8a_E9b	KnownJunction	1	73.14	35.76	34.95	9.86	21.02	8.60	31.54
38	ER9a	ExonRegion	0	1.86	1.16	1.52	0.16	1.01	0.10	1.29
39	ER9b	ExonRegion	0	46.31	24.82	25.14	13.17	20.45	12.62	30.50
40	E9a_E10a	KnownJunction	0	41.98	31.81	38.96	12.92	30.31	18.41	52.94
41	E9a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.89
42	ER10a	ExonRegion	0	39.34	31.20	30.97	19.69	15.04	17.76	43.41
43	E10a_E11a	KnownJunction	0	30.86	34.26	28.91	9.24	14.85	10.77	34.95
44	ER11a	ExonRegion	0	36.71	39.26	30.73	16.81	15.38	17.89	47.96
45	E11_Da	NovelBoundary	0	6.19	3.18	5.16	3.25	0.97	0.00	8.91
46	E11a_E12a	KnownJunction	0	47.33	34.81	30.90	22.21	21.58	14.87	35.30
47	E12_Aa	NovelBoundary	0	16.61	3.99	5.62	1.35	8.99	0.00	9.16
48	ER12a	ExonRegion	1	29.00	32.59	23.31	14.79	10.46	4.74	28.36
49	E12_Da	NovelBoundary	0	11.87	7.12	12.56	4.82	6.29	0.00	3.65
50	E12a_E13a	KnownJunction	1	8.70	18.13	10.43	6.88	3.09	2.20	19.09
51	E12a_E14a	NovelJunction	0	13.77	9.90	7.73	11.68	5.46	5.28	9.52
52	ER13a	ExonRegion	0	17.73	19.13	10.72	6.89	10.17	7.13	17.23
53	E13_Da	NovelBoundary	0	15.07	15.24	10.10	11.05	3.27	6.51	7.74
54	E13a_E14a	KnownJunction	1	3.22	11.27	8.54	5.58	5.14	4.13	15.25
55	I13_AR1	ActiveIntronRegion	0	15.37	8.06	7.78	7.09	4.09	5.42	3.65
56	I13_SR1	SilentIntronRegion	0	16.16	1.10	6.33	3.20	4.38	2.61	2.05
57	E14_Aa	NovelBoundary	0	16.29	4.60	11.93	1.60	6.13	2.92	11.05
58	ER14a	ExonRegion	1	35.08	36.69	25.26	19.95	23.48	10.15	36.01
59	E14a_E15a	KnownJunction	0	57.23	44.06	37.79	24.19	24.80	20.85	41.98
60	ER15a	ExonRegion	0	40.70	41.42	27.24	20.68	20.19	17.19	38.97
61	E15a_E16a	KnownJunction	0	22.20	38.67	19.10	19.97	18.00	16.83	33.05
62	ER16a	ExonRegion	0	42.84	41.37	28.20	22.02	23.18	17.24	39.43
63	E16a_E17a	KnownJunction	1	24.65	34.18	9.00	9.37	17.40	11.55	33.74
64	E16a_E18a	NovelJunction	0	42.39	14.48	28.25	10.73	16.64	9.86	25.01
65	ER17a	ExonRegion	1	23.36	28.78	12.88	9.40	16.71	17.16	34.60
66	E17a_E18a	KnownJunction	1	23.92	21.94	12.43	6.83	10.63	23.18	36.33
67	ER18a	ExonRegion	1	42.23	42.08	20.80	19.57	22.45	20.90	55.40
68	E18a_E19a	KnownJunction	0	49.97	43.32	31.80	24.54	29.78	31.81	61.78
69	ER19a	ExonRegion	0	55.19	48.76	28.57	37.48	22.59	28.99	57.05
70	E19a_E20a	KnownJunction	0	28.87	44.14	19.70	26.52	7.70	22.94	40.37
71	ER20a	ExonRegion	0	56.47	60.88	37.15	45.18	19.69	31.64	66.12
72	E20a_E21a	KnownJunction	0	72.95	76.82	48.76	59.00	52.72	33.15	89.33
73	ER21a	ExonRegion	0	59.15	47.66	39.00	37.89	32.39	27.01	67.60
74	E21a_E22a	KnownJunction	0	67.21	40.85	51.49	26.12	13.72	15.38	78.84
75	ER22a	ExonRegion	0	45.04	45.72	34.84	22.29	17.60	22.48	57.75
76	E22_Da	KnownBoundary	0	33.65	29.90	29.33	10.24	13.76	13.37	29.44
77	E22a_E22b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
78	ER22b	ExonRegion	0	37.13	35.12	28.49	15.49	20.16	23.98	25.07
79	E22_Ab	KnownBoundary	0	5611.21	3530.67	3685.37	2999.17	4306.94	3246.18	2375.20
80	ER22c	ExonRegion	1	67.97	24.70	41.90	16.43	21.96	26.51	25.35
81	ER22d	ExonRegion	0	9.22	1.21	8.47	2.49	0.81	6.13	4.22
82	ER22e	ExonRegion	0	6.94	0.45	6.55	1.52	0.60	4.81	3.05