Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	GLS2	Gene	0	2.57	2.91	5.86	2.05	91.22	0.57	7.13
2	311966	Transcript	0	1.53	1.34	5.54	1.24	111.58	0.27	5.47
3	ER1a	ExonRegion	0	0.00	0.40	0.53	0.41	7.88	0.20	0.26
4	E1a_E2a	KnownJunction	0	0.00	0.00	1.35	0.00	35.18	0.00	2.35
5	ER2a	ExonRegion	0	1.26	0.87	4.21	1.85	53.85	0.00	5.48
6	E2a_E3a	KnownJunction	0	0.75	0.00	6.48	0.00	64.94	0.00	4.96
7	ER3a	ExonRegion	0	0.94	1.67	4.08	0.00	46.13	1.09	3.80
8	E3a_E4a	KnownJunction	0	2.04	3.26	2.73	0.00	68.21	1.66	2.67
9	E3a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	13.12	0.00	0.00
10	ER4a	ExonRegion	0	3.57	3.44	5.34	1.46	84.85	1.05	8.99
11	E4a_E5a	KnownJunction	0	0.00	0.00	2.64	0.00	81.86	1.07	8.84
12	ER5a	ExonRegion	0	1.95	2.02	6.56	1.92	81.02	0.14	8.26
13	E5_Da	NovelBoundary	0	1.62	14.82	1.38	2.95	1.15	1.13	4.82
14	E5a_E6a	KnownJunction	0	0.62	2.10	3.29	1.52	84.83	0.00	8.01
15	E6_Aa	NovelBoundary	0	1.64	11.19	4.18	2.98	12.36	0.00	7.88
16	ER6a	ExonRegion	0	1.72	6.85	6.39	0.77	101.63	1.70	8.89
17	E6_Da	NovelBoundary	0	1.00	8.28	1.98	3.17	8.18	1.58	9.73
18	E6a_E7a	KnownJunction	0	0.83	0.00	5.81	0.00	115.31	0.00	3.32
19	ER7a	ExonRegion	0	1.59	0.02	4.56	0.00	86.43	0.00	4.15
20	E7a_E8a	KnownJunction	0	0.97	1.29	3.23	0.00	78.52	0.00	1.49
21	ER8a	ExonRegion	0	1.40	1.21	7.04	0.00	96.15	0.00	1.94
22	E8_Da	NovelBoundary	0	0.68	7.33	5.60	3.93	8.81	1.66	9.23
23	E8a_E9a	KnownJunction	0	0.95	1.63	5.88	0.00	90.32	0.00	1.43
24	ER9a	ExonRegion	0	0.40	0.89	5.34	0.68	114.46	0.00	4.07
25	E9_Da	NovelBoundary	0	4.44	7.49	5.36	6.47	9.73	0.00	8.00
26	E9a_E10a	KnownJunction	0	0.00	0.00	3.71	2.55	150.83	0.00	5.98
27	I9	Intron	0	5.00	3.95	4.18	2.77	7.30	1.09	7.58
28	I9_SR1	SilentIntronRegion	0	5.10	3.85	4.59	2.85	7.48	1.05	7.89
29	E10_Aa	NovelBoundary	0	10.71	5.39	4.40	4.44	12.63	1.55	9.47
30	ER10a	ExonRegion	0	2.25	0.00	8.41	2.23	147.96	0.00	6.33
31	E10a_E11a	KnownJunction	0	3.34	0.00	11.60	0.00	139.35	0.00	3.11
32	I10	Intron	0	4.63	3.14	2.67	2.58	6.70	1.27	7.98
33	I10_SR1	SilentIntronRegion	0	4.69	3.18	2.71	2.61	6.78	1.29	8.07
34	ER11a	ExonRegion	0	2.21	0.45	7.54	1.52	136.58	0.00	4.50
35	E11_Da	NovelBoundary	0	10.18	8.88	5.33	7.61	6.48	0.00	11.18
36	E11a_E12a	KnownJunction	0	1.03	1.26	1.78	3.36	132.18	0.00	3.61
37	I11	Intron	0	5.88	5.86	1.92	2.27	6.28	0.75	11.04
38	I11_SR1	SilentIntronRegion	0	5.43	7.02	1.92	2.53	6.58	0.89	13.04
39	I11_SR2	SilentIntronRegion	0	6.49	4.05	1.90	1.86	5.65	0.52	7.84
40	E12_Aa	NovelBoundary	0	6.24	8.80	7.75	2.76	6.94	1.55	8.37
41	ER12a	ExonRegion	0	6.27	7.65	6.60	3.25	120.91	1.05	12.16
42	E12_Da	NovelBoundary	0	3.89	14.32	4.37	3.71	9.11	0.00	6.23
43	E12a_E13a	KnownJunction	0	0.77	0.00	5.56	0.00	96.50	0.00	0.87
44	ER13a	ExonRegion	0	2.58	2.71	6.84	0.03	133.53	0.71	6.72
45	E13_Da	NovelBoundary	0	3.81	12.24	2.31	0.00	6.41	6.00	4.64
46	E13a_E14a	KnownJunction	0	3.64	0.00	9.83	0.00	164.97	0.00	5.46
47	ER14a	ExonRegion	0	3.90	0.00	9.93	1.01	163.59	0.00	6.25
48	E14_Da	NovelBoundary	0	5.09	9.20	4.71	1.49	6.45	2.84	3.57
49	E14a_E15a	KnownJunction	0	0.00	0.00	6.08	0.00	169.00	0.00	3.61
50	ER15a	ExonRegion	0	0.58	0.00	4.73	0.26	189.23	0.00	4.59
51	E15a_E16a	KnownJunction	0	1.03	0.00	4.40	1.11	137.56	0.00	7.91
52	ER16a	ExonRegion	0	0.85	0.92	6.77	4.34	157.49	0.00	8.87
53	E16_Da	NovelBoundary	0	8.83	11.69	4.07	4.42	8.35	1.47	7.38
54	E16a_E17a	KnownJunction	0	0.62	1.29	5.92	1.68	147.52	0.00	9.86
55	I16	Intron	0	5.93	7.82	5.10	1.68	9.61	0.66	7.41
56	I16_AR1	ActiveIntronRegion	0	5.97	7.87	5.14	1.69	9.67	0.67	7.45
57	E17_Aa	NovelBoundary	0	7.83	11.35	4.91	1.68	18.37	0.99	7.29
58	ER17a	ExonRegion	0	0.80	0.68	5.98	5.10	159.22	0.00	6.88
59	E17_Da	NovelBoundary	0	6.28	7.78	3.77	5.93	8.28	1.37	5.49
60	E17a_E18a	KnownJunction	0	0.00	1.21	4.08	4.04	165.73	0.00	4.29
61	E18_Aa	NovelBoundary	0	5.52	6.12	3.19	3.36	11.13	2.47	9.90
62	ER18a	ExonRegion	0	4.62	5.04	8.64	4.22	101.54	0.81	11.65