Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	GLI1	Gene	0	0.09	0.26	0.19	2.45	45.11	14.79	0.34
2	228682	Transcript	0	0.16	0.08	0.17	1.70	41.98	11.22	0.43
3	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	1.62	1.18	0.08
4	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	6.27	1.55	0.00
5	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	10.87	3.29	0.80
6	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	11.92	2.68	0.59
7	ER3a	ExonRegion	0	0.00	0.00	0.52	0.00	16.05	6.86	1.37
8	E3a_E4a	KnownJunction	0	0.00	0.00	1.24	0.00	25.20	8.39	0.89
9	ER4a	ExonRegion	0	0.00	0.00	1.06	2.07	32.85	14.21	1.69
10	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	1.41	29.78	13.16	0.00
11	I4	Intron	0	0.00	0.00	0.21	0.38	12.20	9.62	0.21
12	I4_AR1	ActiveIntronRegion	0	0.00	0.00	0.21	0.38	12.29	9.70	0.21
13	ER5a	ExonRegion	0	0.00	0.00	0.36	3.06	35.61	12.11	0.80
14	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	34.44	10.13	0.72
15	I5	Intron	0	0.83	0.00	0.15	0.54	13.08	3.98	0.00
16	I5_SR1	SilentIntronRegion	0	0.86	0.00	0.44	1.61	13.48	3.76	0.00
17	I5_AR1	ActiveIntronRegion	0	0.73	0.00	0.00	0.00	17.74	4.90	0.00
18	I5_AR2	ActiveIntronRegion	0	0.54	0.00	0.00	0.00	16.10	3.75	0.00
19	I5_AR3	ActiveIntronRegion	0	0.86	0.00	0.00	0.00	12.13	4.08	0.00
20	E6_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	17.89	4.88	0.00
21	ER6a	ExonRegion	0	0.00	0.00	0.00	0.04	46.76	12.19	0.43
22	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	50.79	15.22	0.00
23	ER7a	ExonRegion	0	0.85	0.00	0.00	1.43	50.89	13.89	0.68
24	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	3.36	35.32	18.81	0.63
25	I7	Intron	0	0.19	0.88	0.00	0.30	9.04	0.88	0.00
26	I7_SR1	SilentIntronRegion	0	0.14	0.95	0.00	0.00	9.27	0.87	0.00
27	ER8a	ExonRegion	0	0.03	0.62	0.00	3.76	62.32	11.09	0.06
28	E8a_E9a	KnownJunction	0	0.62	0.00	0.00	4.39	88.98	15.65	0.00
29	ER9a	ExonRegion	0	0.53	0.56	0.30	3.43	81.71	18.77	0.34
30	E9a_E10a	KnownJunction	0	1.03	0.00	0.00	0.00	92.53	20.77	0.00
31	ER10a	ExonRegion	0	0.53	0.00	0.22	1.82	76.75	17.09	0.42
32	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	1.68	34.19	6.86	0.00
33	ER11a	ExonRegion	0	0.00	0.34	0.19	5.86	46.35	8.92	0.39
34	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	4.42	51.41	8.15	0.00
35	ER12a	ExonRegion	0	0.00	0.33	0.11	2.38	42.97	17.21	0.08