Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 FIGNL2 Gene 0 0.12 0.33 0.46 0.77 11.62 1.75 0.00 2 388936 Transcript 0 0.01 0.06 0.13 0.60 7.91 2.37 0.00 3 380052 Transcript 0 0.30 0.00 0.79 0.32 19.94 0.48 0.00 4 IG48_AR5 ActiveIntergenicRegion 0 0.18 0.00 0.28 2.81 7.74 3.54 0.00 5 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 3.07 0.00 0.00 6 ER1b ExonRegion 0 0.00 1.21 0.23 0.78 14.28 2.61 0.00 7 E1_Da KnownBoundary 0 0.62 0.00 0.79 1.35 17.04 7.66 0.00 8 ER1c ExonRegion 0 0.00 0.00 0.00 1.25 16.30 4.96 0.00 9 E1b_E1d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER1d ExonRegion 0 0.00 0.00 0.00 1.25 15.74 6.51 0.00 11 ER1e ExonRegion 0 0.00 0.00 0.00 0.79 16.30 4.90 0.00 12 ER1f ExonRegion 0 0.00 0.00 0.54 2.49 18.79 4.90 0.00 13 ER1g ExonRegion 0 0.00 0.00 0.63 0.85 7.35 3.19 0.00 14 E1d_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER2a ExonRegion 0 0.05 0.38 0.18 0.70 4.47 1.15 0.00 16 E2_Da NovelBoundary 0 0.00 0.00 2.05 0.00 17.94 1.37 0.00 17 I2 Intron 0 0.80 0.00 1.07 0.33 30.46 0.32 0.00 18 I2_AR1 ActiveIntronRegion 0 0.83 0.00 1.25 0.39 35.12 0.38 0.00 19 E3_Aa NovelBoundary 0 1.02 0.00 5.45 1.57 47.14 2.87 0.00 20 ER3a ExonRegion 0 0.90 0.00 2.36 0.97 59.81 1.43 0.00 21 E3_Da NovelBoundary 0 0.00 0.00 0.00 1.68 49.01 1.39 0.00 22 I3 Intron 0 0.00 0.00 1.50 0.59 34.39 0.58 0.00 23 I3_AR1 ActiveIntronRegion 0 0.00 0.00 1.52 0.60 34.79 0.59 0.00 24 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 IG47 Intergenic 0 1.58 0.63 3.77 3.13 20.63 1.44 0.39 26 IG47_AR10 ActiveIntergenicRegion 0 0.47 0.20 2.03 1.18 46.91 1.72 0.00 27 IG47_SR7 SilentIntergenicRegion 0 0.58 0.00 0.00 0.00 10.93 0.00 0.00 28 IG47_AR8 ActiveIntergenicRegion 0 0.25 0.00 1.07 0.00 18.24 0.79 0.00 29 IG47_AR6 ActiveIntergenicRegion 0 1.88 0.57 2.15 3.34 13.60 1.01 0.14 30 IG47_SR4 SilentIntergenicRegion 0 1.61 0.77 2.73 3.44 13.99 0.31 0.56 31 IG47_AR5 ActiveIntergenicRegion 0 3.91 0.90 8.57 6.02 32.76 1.48 0.77 32 IG47_SR3 SilentIntergenicRegion 0 6.01 2.79 20.62 7.72 78.77 2.56 2.09 33 IG47_AR4 ActiveIntergenicRegion 0 3.10 3.64 17.39 7.52 47.90 4.05 1.53 34 IG47_SR2 SilentIntergenicRegion 0 3.07 3.04 12.11 4.99 39.18 3.68 0.67 35 IG47_AR3 ActiveIntergenicRegion 0 3.19 0.67 8.46 11.56 31.70 4.40 1.80 36 IG47_AR2 ActiveIntergenicRegion 0 3.84 0.00 8.35 9.98 32.66 5.31 2.92 37 IG47_SR1 SilentIntergenicRegion 0 4.21 0.42 7.79 10.89 35.51 4.55 1.53