Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	KIAA1602	Gene	0	39.77	58.30	35.28	63.31	34.81	97.92	30.18
2	335999	Transcript	0	29.07	57.46	24.18	49.42	35.87	77.80	30.64
3	354423	Transcript	0	18.59	0.00	17.49	0.00	0.00	0.00	0.00
4	ER1a	ExonRegion	0	15.40	12.66	10.77	13.50	12.98	21.05	7.81
5	E1a_E2a	KnownJunction	0	10.66	15.13	10.98	15.98	3.94	23.13	7.84
6	I1_AR2	ActiveIntronRegion	1	5.38	1.21	12.19	9.56	1.62	6.13	0.67
7	I1_AR3	ActiveIntronRegion	0	5.96	1.21	11.06	11.64	1.62	4.60	0.67
8	ER2a	ExonRegion	0	3.20	13.72	7.09	9.98	6.54	29.33	5.65
9	E2a_E3a	KnownJunction	1	3.19	19.91	6.90	8.56	5.16	39.26	6.66
10	ER3a	ExonRegion	0	24.55	39.48	16.67	23.32	31.96	69.03	19.91
11	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER4a	ExonRegion	0	31.98	71.04	26.43	51.16	63.71	109.70	38.71
13	E4a_E5a	KnownJunction	0	40.77	95.37	35.06	74.77	56.94	93.18	37.48
14	ER5a	ExonRegion	0	40.96	115.01	26.59	96.18	53.89	117.13	63.39
15	E5_Da	NovelBoundary	1	11.28	0.00	15.68	7.56	1.06	15.09	0.00
16	E5a_E6a	KnownJunction	1	35.45	98.52	17.68	83.36	55.58	114.49	63.62
17	I5	Intron	1	33.57	5.39	27.39	12.31	1.98	14.69	1.27
18	I5_AR1	ActiveIntronRegion	1	28.68	4.81	21.80	10.38	1.85	14.61	1.27
19	I5_SR1	SilentIntronRegion	1	40.80	6.24	35.57	15.17	2.17	14.91	1.27
20	E6_Aa	NovelBoundary	1	32.01	13.16	23.24	15.28	5.19	23.66	0.79
21	ER6a	ExonRegion	0	70.81	115.92	57.04	97.37	64.86	153.22	55.99
22	E6_Da	NovelBoundary	1	7.23	2.42	13.15	2.68	3.23	1.66	1.69
23	E6a_E7a	KnownJunction	0	45.70	91.42	32.58	98.39	67.64	107.23	51.22
24	E6a_E8a	NovelJunction	0	11.15	14.29	10.72	18.67	1.11	18.09	3.18
25	ER7a	ExonRegion	0	29.86	57.26	26.78	51.76	41.64	75.46	36.97
26	E7a_E8a	KnownJunction	0	37.85	47.05	42.79	36.06	43.25	89.40	32.16
27	ER8a	ExonRegion	0	42.32	63.24	40.77	72.68	32.50	97.81	31.41
28	E8_Ab	KnownBoundary	0	51.71	70.51	48.00	62.72	32.69	104.22	41.25
29	ER8b	ExonRegion	0	37.65	57.23	29.03	58.71	26.28	96.40	27.89
30	E8_Da	KnownBoundary	0	35.47	73.27	36.27	51.96	36.84	107.65	25.48
31	E8a_E8c	KnownJunction	0	18.59	0.00	17.49	0.00	0.00	0.00	0.00
32	ER8c	ExonRegion	0	32.46	63.61	28.73	57.58	33.34	105.42	31.46
33	E8_Ac	KnownBoundary	0	41.17	73.24	42.44	69.62	36.61	119.88	46.51
34	ER8d	ExonRegion	0	40.33	61.57	36.94	67.99	34.80	102.12	31.45
35	E8b_E9a	KnownJunction	0	68.18	72.85	71.36	60.14	59.59	118.91	32.85
36	ER9a	ExonRegion	0	74.68	76.71	73.70	81.33	55.57	146.81	48.66
37	E9a_E10a	KnownJunction	0	94.18	79.29	94.47	92.92	52.70	150.91	56.51
38	ER10a	ExonRegion	0	66.15	77.97	67.43	81.68	50.25	152.13	48.99
39	E10_Da	NovelBoundary	1	7.59	0.00	12.07	6.23	0.00	2.41	1.43
40	E10a_E11a	KnownJunction	0	45.98	97.36	34.43	72.47	41.31	131.40	36.14
41	ER11a	ExonRegion	0	35.79	45.31	30.86	52.36	35.17	84.13	27.95
42	E11a_E12a	KnownJunction	1	31.89	37.36	21.14	35.30	29.25	77.42	10.15
43	ER12a	ExonRegion	0	28.34	33.04	19.03	51.70	24.15	80.66	22.86
44	E12_Da	NovelBoundary	1	9.08	10.75	11.24	28.61	7.98	33.50	10.13
45	E12a_E13a	KnownJunction	0	18.89	27.24	11.09	26.01	18.14	56.12	17.79
46	I12	Intron	0	21.69	22.91	25.28	32.67	7.62	47.19	11.54
47	I12_AR1	ActiveIntronRegion	0	21.80	23.01	25.40	32.83	7.65	47.41	11.60
48	E13_Aa	NovelBoundary	1	11.38	20.02	14.73	21.46	5.30	44.09	2.05
49	ER13a	ExonRegion	0	35.29	49.90	26.05	55.97	33.91	100.57	23.54
50	IG49	Intergenic	0	29.38	5.16	12.76	13.68	1.43	11.63	4.02
51	IG49_SR1	SilentIntergenicRegion	0	29.47	5.18	12.79	13.72	1.44	11.66	4.03