Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	FGD4	Gene	0	31.56	28.81	29.04	7.68	72.19	8.52	31.21
2	381025	Transcript	0	0.94	0.00	0.02	0.00	0.07	0.00	0.00
3	266482	Transcript	0	54.38	33.04	29.59	10.91	119.58	8.35	32.67
4	395740	Transcript	0	0.67	0.17	0.94	0.00	2.24	0.00	0.23
5	395742	Transcript	0	4.88	4.52	3.31	0.78	11.41	0.79	3.24
6	IG28	Intergenic	0	4.49	1.70	3.07	0.71	13.18	0.08	2.67
7	IG28_AR1	ActiveIntergenicRegion	0	5.96	16.69	2.95	2.73	36.53	3.56	6.69
8	IG28_SR2	SilentIntergenicRegion	0	8.85	3.23	6.13	1.55	30.87	0.13	3.82
9	IG28_AR3	ActiveIntergenicRegion	0	5.29	1.68	4.39	0.92	16.66	0.00	2.59
10	IG28_AR4	ActiveIntergenicRegion	0	3.84	1.62	6.92	1.25	23.22	0.00	2.77
11	IG28_SR3	SilentIntergenicRegion	0	4.97	1.94	3.65	1.47	20.83	0.00	2.75
12	IG28_AR5	ActiveIntergenicRegion	0	13.96	4.99	5.01	3.04	45.10	0.48	5.99
13	IG28_AR6	ActiveIntergenicRegion	0	17.03	3.54	6.66	1.40	80.01	0.00	3.49
14	IG28_AR7	ActiveIntergenicRegion	0	15.72	2.21	4.80	1.25	68.98	0.00	3.01
15	IG28_SR4	SilentIntergenicRegion	0	7.30	2.00	4.00	1.19	24.97	0.05	3.80
16	IG28_AR8	ActiveIntergenicRegion	0	5.47	2.37	4.55	0.45	24.07	0.00	4.33
17	IG28_AR9	ActiveIntergenicRegion	0	6.06	2.43	7.45	0.00	22.14	0.00	3.37
18	IG28_AR10	ActiveIntergenicRegion	0	5.10	2.43	7.26	0.00	20.01	0.00	3.37
19	IG28_SR5	SilentIntergenicRegion	0	1.50	0.96	1.37	0.11	9.34	0.00	1.25
20	IG28_AR11	ActiveIntergenicRegion	0	4.64	0.54	2.23	0.00	10.13	0.00	2.38
21	IG28_SR6	SilentIntergenicRegion	0	5.04	1.56	3.73	0.65	16.44	0.13	3.30
22	IG28_AR12	ActiveIntergenicRegion	0	5.72	0.01	5.88	1.98	22.75	0.00	3.44
23	IG28_AR13	ActiveIntergenicRegion	0	2.04	1.66	2.32	0.48	16.52	0.00	2.90
24	IG28_AR14	ActiveIntergenicRegion	0	3.55	1.21	3.05	0.00	17.72	0.00	4.38
25	IG28_SR7	SilentIntergenicRegion	0	2.91	0.58	1.78	0.35	9.77	0.07	2.26
26	IG28_AR15	ActiveIntergenicRegion	0	8.17	0.09	1.83	0.54	13.75	0.50	2.65
27	IG28_AR16	ActiveIntergenicRegion	0	4.93	0.50	3.56	0.51	14.94	0.00	2.86
28	IG28_SR8	SilentIntergenicRegion	0	4.43	1.71	3.24	0.81	15.80	0.00	3.43
29	IG28_AR18	ActiveIntergenicRegion	0	2.76	2.74	3.18	0.44	11.31	0.98	3.48
30	IG28_SR9	SilentIntergenicRegion	0	4.38	0.95	2.95	0.68	9.74	0.05	2.51
31	IG28_AR19	ActiveIntergenicRegion	0	4.56	1.68	2.97	0.00	8.43	1.01	1.33
32	IG28_AR20	ActiveIntergenicRegion	0	8.59	4.14	5.88	0.00	11.80	0.82	2.07
33	IG28_AR21	ActiveIntergenicRegion	0	5.70	3.66	3.34	0.00	12.31	0.00	0.82
34	IG28_SR10	SilentIntergenicRegion	0	4.37	1.53	3.08	0.50	12.09	0.04	2.80
35	IG28_AR22	ActiveIntergenicRegion	0	4.01	1.72	3.70	0.00	9.95	0.00	4.09
36	IG28_SR11	SilentIntergenicRegion	0	4.53	1.40	3.65	0.32	9.02	0.16	1.88
37	IG28_AR24	ActiveIntergenicRegion	0	5.16	2.46	1.46	0.63	8.35	0.00	0.76
38	IG28_AR25	ActiveIntergenicRegion	0	5.08	3.15	4.90	2.23	18.18	0.00	2.23
39	IG28_SR14	SilentIntergenicRegion	0	3.97	1.78	2.51	1.15	9.22	0.11	2.26
40	IG28_AR26	ActiveIntergenicRegion	0	2.82	1.75	2.60	0.00	10.80	0.00	3.19
41	IG28_AR27	ActiveIntergenicRegion	0	5.04	4.22	4.95	0.70	12.97	0.00	4.19
42	IG28_AR28	ActiveIntergenicRegion	0	4.79	2.00	5.66	1.29	12.30	0.00	3.21
43	IG28_AR33	ActiveIntergenicRegion	0	0.49	2.19	1.35	0.00	13.22	0.00	0.67
44	IG28_AR34	ActiveIntergenicRegion	0	2.70	7.33	3.71	0.00	11.42	0.00	1.24
45	IG28_AR35	ActiveIntergenicRegion	0	4.61	8.50	6.10	0.00	9.04	0.00	1.35
46	IG28_AR36	ActiveIntergenicRegion	0	4.61	7.83	6.10	0.00	7.74	0.00	1.35
47	ER1a	ExonRegion	0	0.77	1.33	0.00	0.00	0.44	0.00	0.67
48	ER1b	ExonRegion	0	5.55	1.61	9.07	1.17	6.59	0.02	1.48
49	E1a_E2a	KnownJunction	0	3.14	0.00	6.90	0.00	0.00	0.00	0.00
50	ER2a	ExonRegion	0	16.58	48.39	24.95	15.17	35.50	10.24	31.25
51	E2a_E3a	KnownJunction	0	34.65	65.52	38.15	24.33	49.06	24.23	65.12
52	E2a_E5b	NovelJunction	0	1.03	17.05	5.33	0.00	7.40	5.95	4.59
53	ER3a	ExonRegion	0	29.64	47.12	41.11	11.39	78.11	16.49	52.30
54	E3a_E5b	KnownJunction	0	29.62	35.55	36.96	7.99	59.87	17.71	40.67
55	I3_SR1	SilentIntronRegion	0	8.55	4.01	7.35	1.45	25.52	1.20	2.53
56	I3_AR1	ActiveIntronRegion	0	4.46	6.08	4.67	0.07	15.26	0.45	2.36
57	I3_AR2	ActiveIntronRegion	1	7.06	6.30	6.53	2.49	23.50	0.31	8.63
58	I3_SR3	SilentIntronRegion	0	5.49	3.72	3.95	0.60	16.46	0.50	3.30
59	E4_Aa	NovelBoundary	1	3.76	9.20	1.42	0.00	22.80	0.00	4.37
60	ER4a	ExonRegion	0	6.68	6.54	3.28	0.00	16.76	0.00	2.68
61	E4a_E5a	KnownJunction	0	0.58	0.00	0.00	0.00	0.00	0.00	0.00
62	E5_Aa	NovelBoundary	0	8.19	8.20	6.74	0.00	20.31	0.00	4.64
63	ER5a	ExonRegion	0	6.33	5.26	6.44	1.92	16.31	0.57	4.37
64	E5_Ab	KnownBoundary	0	9.93	3.65	1.87	1.27	13.37	1.58	5.27
65	ER5b	ExonRegion	0	37.15	59.88	43.42	14.14	96.92	14.58	63.91
66	E5_Da	KnownBoundary	0	6.63	13.79	3.82	2.57	8.55	2.81	4.01
67	E5a_E6a	KnownJunction	1	37.72	33.63	39.86	11.38	60.08	0.00	32.60
68	ER5c	ExonRegion	0	5.90	6.28	3.53	1.20	12.58	2.57	5.90
69	I5_AR2	ActiveIntronRegion	0	5.87	4.36	6.12	0.00	18.76	0.00	2.94
70	I5_SR4	SilentIntronRegion	0	3.36	3.98	2.28	1.22	14.74	0.25	3.79
71	ER6a	ExonRegion	0	47.39	37.53	36.94	9.68	91.49	7.76	37.01
72	E6a_E7a	KnownJunction	0	0.00	0.00	1.41	0.00	1.04	0.00	0.00
73	E6a_E8a	KnownJunction	0	57.90	33.79	40.65	17.23	89.05	6.03	37.35
74	ER7a	ExonRegion	0	1.37	0.00	0.99	0.00	5.60	0.00	0.01
75	E7a_E8a	KnownJunction	0	0.93	0.00	0.65	0.00	0.00	0.00	0.00
76	E8_Aa	NovelBoundary	1	25.50	0.00	22.73	0.00	10.12	0.00	1.65
77	ER8a	ExonRegion	1	76.71	29.16	64.24	11.54	115.03	14.20	35.42
78	E8a_E9a	KnownJunction	0	72.67	32.60	65.92	6.72	116.58	14.82	37.78
79	ER9a	ExonRegion	0	65.95	34.93	72.61	9.60	117.67	14.91	42.31
80	E9a_E10a	KnownJunction	0	33.61	22.59	47.41	4.85	85.71	9.19	31.92
81	ER10a	ExonRegion	0	35.58	27.57	49.86	3.82	96.14	8.30	43.22
82	E10a_E11a	KnownJunction	0	45.36	29.82	56.50	1.19	136.57	6.03	51.82
83	ER11a	ExonRegion	0	49.41	30.33	62.07	9.07	113.05	5.42	48.81
84	E11a_E12a	KnownJunction	0	44.09	29.63	53.93	14.55	96.96	7.34	39.70
85	ER12a	ExonRegion	0	66.06	40.93	63.22	15.08	140.31	11.15	56.52
86	E12a_E13a	KnownJunction	0	70.08	33.02	70.24	17.31	174.83	14.04	55.96
87	ER13a	ExonRegion	0	72.30	54.36	55.91	15.69	147.88	19.29	60.45
88	E13a_E14a	KnownJunction	0	56.60	45.63	44.58	7.53	174.86	15.65	45.90
89	E14a_E16a	KnownJunction	0	35.17	20.54	26.92	13.71	118.47	2.55	35.37
90	ER14a	ExonRegion	0	58.75	45.07	49.71	14.76	174.51	8.11	55.12
91	ER15a	ExonRegion	0	0.94	0.00	0.02	0.00	0.07	0.00	0.00
92	E15_Da	NovelBoundary	0	388.16	245.45	218.08	229.81	152.82	175.35	212.43
93	ER16a	ExonRegion	0	42.80	44.78	34.85	11.40	111.90	15.66	50.91
94	E16a_E17a	KnownJunction	0	48.45	48.39	36.41	7.15	111.78	23.74	54.66
95	ER17a	ExonRegion	0	37.81	44.45	34.41	11.99	106.87	13.92	57.78
96	E17a_E18a	KnownJunction	0	26.70	44.35	27.46	10.51	110.72	10.85	42.81
97	ER18a	ExonRegion	0	50.96	41.80	42.59	15.77	116.42	16.42	59.05
98	E18a_E19a	KnownJunction	0	53.59	41.48	34.91	7.78	139.26	12.25	48.74
99	ER19a	ExonRegion	0	47.80	41.00	36.28	10.00	123.15	12.16	46.29
100	E19_Da	KnownBoundary	0	0.70	0.00	1.77	0.00	4.45	0.00	0.82
101	E19a_E20a	KnownJunction	0	51.72	24.88	24.27	12.03	101.87	3.81	29.16
102	ER19b	ExonRegion	0	0.37	0.69	0.72	0.00	2.34	0.00	0.91
103	ER20a	ExonRegion	0	57.03	41.20	34.91	9.80	137.29	12.90	36.18
104	IG29_AR1	ActiveIntergenicRegion	0	11.91	8.05	5.84	1.25	27.13	0.92	2.19
105	IG29_SR1	SilentIntergenicRegion	0	25.27	15.74	16.07	1.25	55.39	1.77	6.93
106	IG29_AR2	ActiveIntergenicRegion	0	28.79	14.37	24.70	3.18	100.62	4.88	25.32