Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DDX12	Gene	0	8.47	4.49	2.53	4.11	37.21	2.82	2.87
2	290818	Transcript	0	5.10	1.29	1.43	0.82	16.53	0.57	1.77
3	ER1a	ExonRegion	0	7.82	4.16	2.90	1.95	18.41	2.58	1.82
4	E1a_E2a	KnownJunction	0	13.32	2.97	4.12	1.14	15.17	0.00	2.08
5	I1	Intron	0	1.76	0.45	0.73	1.55	14.68	0.31	0.54
6	I1_AR1	ActiveIntronRegion	0	3.13	0.88	1.53	3.34	24.91	0.88	1.03
7	I1_SR1	SilentIntronRegion	0	0.88	0.00	0.00	0.00	8.40	0.00	0.29
8	I1_AR2	ActiveIntronRegion	0	1.50	0.00	0.00	0.58	8.63	0.00	0.02
9	I1_SR2	SilentIntronRegion	0	0.85	0.32	0.46	0.66	9.36	0.00	0.35
10	I1	Intron	0	0.95	0.78	0.32	0.35	12.55	0.96	0.00
11	I1_SR1	SilentIntronRegion	0	0.24	0.36	0.00	0.00	11.34	0.00	0.00
12	I1_AR1	ActiveIntronRegion	0	0.95	1.53	0.00	0.00	9.37	0.00	0.00
13	I1_SR2	SilentIntronRegion	0	1.27	0.53	0.66	0.72	15.02	1.97	0.00
14	ER2a	ExonRegion	0	6.79	2.31	1.67	1.55	21.01	0.63	1.86
15	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER3a	ExonRegion	0	3.92	0.30	1.35	0.61	7.87	0.00	1.18
17	E3a_E4a	KnownJunction	0	8.46	1.37	1.48	1.16	19.89	0.00	2.32
18	ER4a	ExonRegion	0	3.74	0.49	0.82	0.92	4.15	0.00	1.23
19	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER5a	ExonRegion	0	1.11	0.48	0.00	0.00	4.91	0.00	0.00
21	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER6a	ExonRegion	0	0.00	0.00	0.00	0.24	0.61	0.00	0.00
23	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	ER7a	ExonRegion	0	0.35	0.00	0.72	0.76	3.71	0.00	0.46
25	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	ER8a	ExonRegion	0	0.24	0.00	0.29	0.00	4.37	0.00	0.00
27	E8_Da	NovelBoundary	0	11.30	4.39	1.64	1.68	38.84	0.00	0.75
28	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	I8	Intron	0	3.16	1.86	1.30	1.20	8.74	0.00	0.65
30	I8_SR1	SilentIntronRegion	0	3.21	2.96	1.27	2.35	10.80	0.00	0.60
31	ER9a	ExonRegion	0	1.71	0.00	0.34	0.00	2.03	0.00	1.03
32	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	ER10a	ExonRegion	0	4.58	0.00	0.77	4.91	20.77	0.00	2.65
34	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER11a	ExonRegion	0	10.87	1.47	4.93	0.00	9.10	0.00	3.93
36	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER12a	ExonRegion	0	8.75	2.82	2.27	0.23	9.52	0.00	5.44
38	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER13a	ExonRegion	0	18.73	2.51	3.06	1.25	58.65	0.00	8.63
40	E13a_E14a	KnownJunction	0	25.50	2.86	4.99	1.27	92.42	0.00	10.75
41	ER14a	ExonRegion	0	18.77	3.13	4.63	0.29	76.60	1.15	10.28
42	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	ER15a	ExonRegion	0	8.24	0.93	2.55	0.00	41.14	5.82	6.64
44	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	ER16a	ExonRegion	0	22.40	4.13	5.10	0.00	35.79	1.52	5.30
46	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	ER17a	ExonRegion	0	16.28	3.51	4.67	2.15	67.12	4.05	4.57
48	E17a_E18a	KnownJunction	0	25.45	0.00	6.31	0.00	52.70	1.26	4.08
49	ER18a	ExonRegion	0	15.14	2.80	5.69	0.85	29.81	0.87	3.25
50	E18a_E19a	KnownJunction	0	0.00	0.00	0.53	0.00	3.41	0.00	0.00
51	ER19a	ExonRegion	0	4.51	3.28	1.55	1.23	23.60	0.20	0.77
52	E19a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	ER20a	ExonRegion	0	6.81	2.06	4.22	2.71	48.78	0.00	0.99
54	E20a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.89
55	I20	Intron	0	5.25	0.82	0.68	0.00	12.31	0.41	0.68
56	I20_SR1	SilentIntronRegion	0	6.09	0.61	1.15	0.00	12.50	0.88	0.38
57	I20_AR1	ActiveIntronRegion	0	6.12	1.21	0.75	0.00	14.26	0.38	1.05
58	ER21a	ExonRegion	0	7.80	2.75	3.19	1.25	18.66	0.00	3.36
59	E21a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	ER22a	ExonRegion	0	2.64	0.00	0.47	0.00	11.69	0.00	0.07
61	E22a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
62	ER23a	ExonRegion	0	2.69	2.51	0.00	0.00	14.10	0.00	1.51
63	E23a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	ER24a	ExonRegion	0	1.39	0.90	0.00	0.00	7.80	0.00	0.60
65	E24a_E25a	KnownJunction	0	0.00	0.00	0.70	0.00	10.14	0.00	0.82
66	ER25a	ExonRegion	0	1.62	2.57	0.40	0.46	19.22	0.00	0.22
67	E25a_E26a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
68	ER26a	ExonRegion	0	6.26	6.30	1.83	5.74	36.83	3.47	2.14
69	E26a_E27a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
70	ER27a	ExonRegion	0	14.16	12.01	4.18	12.58	85.90	8.84	4.82
71	IG47	Intergenic	0	1.04	0.14	0.32	0.31	9.17	0.05	0.19
72	IG47_AR14	ActiveIntergenicRegion	0	1.35	0.00	0.42	0.22	8.64	0.00	0.00
73	IG47_SR10	SilentIntergenicRegion	0	0.64	0.21	0.80	0.00	11.70	0.00	0.12
74	IG47_AR11	ActiveIntergenicRegion	0	0.43	0.00	1.12	0.00	23.78	0.00	0.74
75	IG47_SR8	SilentIntergenicRegion	0	0.88	0.38	0.05	0.00	11.26	0.00	0.11
76	IG47_AR9	ActiveIntergenicRegion	0	2.02	0.33	0.42	0.00	33.63	0.00	0.53
77	IG47_SR7	SilentIntergenicRegion	0	3.19	0.15	0.49	0.06	12.30	0.00	0.44
78	IG47_AR8	ActiveIntergenicRegion	0	3.19	0.33	0.67	0.63	26.77	0.41	0.28
79	IG47_AR7	ActiveIntergenicRegion	0	1.03	0.00	0.00	0.00	23.92	0.00	0.00
80	IG47_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	16.62	0.00	0.00