Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CD27	Gene	0	4.03	3.63	1.84	3.65	3.60	14.22	3.27
2	266557	Transcript	0	2.96	1.73	1.24	2.17	2.78	8.69	1.74
3	IG9	Intergenic	0	3.51	4.99	1.20	6.41	0.84	16.85	2.48
4	IG9_SR1	SilentIntergenicRegion	0	1.22	6.81	0.42	6.74	0.56	17.88	0.83
5	IG9_AR1	ActiveIntergenicRegion	0	14.04	10.35	4.24	9.92	2.22	34.99	15.90
6	IG9_SR2	SilentIntergenicRegion	0	2.36	3.19	0.92	5.59	0.69	12.89	0.47
7	IG9_AR2	ActiveIntergenicRegion	0	0.14	2.79	0.00	5.06	0.00	8.51	0.00
8	ER1a	ExonRegion	0	0.67	2.66	0.84	2.18	0.59	16.66	0.29
9	E1_Da	NovelBoundary	0	1.74	3.99	1.39	4.55	0.00	19.19	0.79
10	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	I1	Intron	0	1.52	2.88	0.53	5.39	0.64	20.32	0.27
12	I1_SR1	SilentIntronRegion	0	1.84	3.02	0.71	6.39	0.69	22.36	0.27
13	I1_AR1	ActiveIntronRegion	0	1.03	2.72	0.26	3.85	0.58	17.44	0.28
14	E2_Aa	NovelBoundary	0	1.03	4.36	0.57	8.59	1.11	31.09	0.00
15	ER2a	ExonRegion	0	3.50	2.80	0.39	2.88	1.25	15.98	0.39
16	E2_Da	NovelBoundary	0	1.79	11.24	0.66	5.74	1.13	33.74	1.39
17	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	I2	Intron	0	7.64	4.87	3.10	4.91	5.36	13.60	4.29
19	I2_SR1	SilentIntronRegion	0	4.31	5.27	1.25	5.42	1.45	20.33	1.33
20	I2_AR4	ActiveIntronRegion	0	13.59	5.60	5.34	5.56	10.27	12.02	8.11
21	I2_AR6	ActiveIntronRegion	0	1.57	4.34	2.41	3.19	2.77	9.37	2.39
22	E3_Aa	NovelBoundary	0	0.92	4.39	0.69	4.04	5.21	11.10	2.87
23	ER3a	ExonRegion	0	1.31	3.56	2.29	3.16	2.96	15.09	3.43
24	E3_Da	NovelBoundary	0	12.40	9.14	2.46	3.33	5.88	18.81	14.62
25	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	I3	Intron	0	16.01	5.40	3.10	4.54	8.08	12.38	12.51
27	I3_AR1	ActiveIntronRegion	0	16.18	5.45	3.12	4.59	8.16	12.50	12.62
28	E4_Aa	NovelBoundary	0	33.26	10.32	5.19	11.65	8.41	29.05	21.37
29	ER4a	ExonRegion	0	4.92	1.03	1.65	3.10	6.70	9.00	5.04
30	E4_Da	NovelBoundary	0	22.98	10.72	2.83	8.15	10.58	13.02	8.94
31	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	2.07	0.00	0.00
32	I4	Intron	0	47.77	5.94	7.57	6.08	11.83	9.83	11.58
33	I4_AR1	ActiveIntronRegion	0	48.12	5.98	7.63	6.12	11.92	9.90	11.66
34	E5_Aa	NovelBoundary	0	48.98	10.93	9.97	9.92	4.96	13.80	10.72
35	ER5a	ExonRegion	0	18.31	3.85	5.32	8.60	10.53	18.65	4.20
36	E5_Da	NovelBoundary	0	20.24	6.49	3.00	0.00	8.02	12.03	1.52
37	E5a_E6a	KnownJunction	0	0.00	0.00	1.15	0.00	2.03	8.90	0.00
38	E6_Aa	NovelBoundary	0	5.19	1.63	1.61	7.50	0.85	8.95	1.76
39	ER6a	ExonRegion	0	3.88	5.10	1.95	3.99	4.39	11.34	5.74
40	IG10	Intergenic	0	3.21	2.96	3.47	4.05	1.54	13.65	0.68
41	IG10_AR1	ActiveIntergenicRegion	0	3.23	2.98	3.49	4.08	1.55	13.73	0.68