Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CEP164	Gene	0	28.78	19.56	33.21	19.94	24.47	14.49	53.66
2	278935	Transcript	0	25.88	17.76	31.53	18.71	24.75	14.02	58.51
3	375253	Transcript	0	5.56	4.64	7.33	3.42	1.33	3.02	10.31
4	ER1a	ExonRegion	0	0.38	0.00	0.77	0.20	1.60	0.00	0.23
5	E1a_E2a	KnownJunction	0	1.45	0.00	1.58	0.00	3.20	0.00	0.00
6	ER2a	ExonRegion	0	7.59	1.79	8.11	3.72	11.80	1.69	17.13
7	E2_Da	NovelBoundary	0	73.59	47.89	52.75	21.65	48.60	29.67	59.33
8	E2a_E3a	KnownJunction	0	7.98	7.33	12.10	4.25	11.39	2.87	24.94
9	ER3a	ExonRegion	0	17.49	10.60	24.85	16.26	16.33	10.86	38.86
10	E3a_E4a	KnownJunction	0	31.33	19.13	41.56	21.16	15.95	11.71	46.53
11	ER4a	ExonRegion	0	31.81	21.97	34.68	31.82	21.04	25.13	63.92
12	E4a_E5a	KnownJunction	0	30.93	27.56	25.36	33.95	19.11	17.39	60.79
13	ER5a	ExonRegion	0	28.72	21.51	34.17	24.14	21.87	24.42	54.15
14	E5a_E7a	KnownJunction	0	23.40	8.72	46.80	10.46	15.86	14.63	47.81
15	ER6a	ExonRegion	0	1.75	2.24	1.27	2.32	2.30	0.22	2.48
16	E6a_E7a	KnownJunction	0	0.92	1.37	0.00	1.57	0.00	1.66	0.83
17	ER7a	ExonRegion	0	20.72	23.28	39.08	15.50	19.86	13.85	44.40
18	E7a_E8a	KnownJunction	0	27.54	20.81	53.33	15.06	21.32	13.45	53.63
19	ER8a	ExonRegion	0	30.94	32.19	53.28	17.52	22.36	15.10	61.09
20	E8_Da	KnownBoundary	0	14.49	8.88	24.56	5.63	9.34	5.07	25.93
21	E8a_E8b	KnownJunction	1	13.77	23.85	22.55	8.05	0.00	9.14	33.25
22	E8_Ab	KnownBoundary	1	9.35	26.90	20.08	7.21	9.18	8.09	21.44
23	ER8b	ExonRegion	0	31.20	38.39	49.72	18.70	25.11	15.45	55.32
24	ER8c	ExonRegion	1	19.65	25.37	32.58	9.49	18.65	9.15	42.90
25	E8b_E9a	KnownJunction	1	13.42	11.87	18.31	1.16	12.84	4.10	30.15
26	E8b_E10a	NovelJunction	0	16.54	12.22	22.55	17.93	22.87	12.09	40.24
27	ER9a	ExonRegion	0	17.21	12.09	19.54	6.87	16.57	4.02	23.80
28	E9a_E10a	KnownJunction	0	19.68	6.94	21.93	3.09	13.32	6.83	24.19
29	ER10a	ExonRegion	0	64.76	28.53	60.19	25.05	39.32	19.22	67.28
30	E10a_E11a	KnownJunction	0	60.20	23.64	65.60	22.86	44.31	18.22	72.40
31	ER11a	ExonRegion	0	50.41	28.51	48.09	24.69	39.23	17.16	69.20
32	E11a_E12a	KnownJunction	0	50.55	21.91	44.32	23.30	31.81	12.52	60.84
33	ER12a	ExonRegion	0	41.27	15.85	42.22	24.95	24.47	14.49	59.55
34	E12a_E13a	KnownJunction	1	19.06	14.69	22.19	27.25	15.61	6.14	47.80
35	ER13a	ExonRegion	0	13.45	10.02	20.03	13.03	13.18	5.98	39.04
36	E13a_E14a	KnownJunction	0	20.75	4.07	26.61	6.04	13.32	6.06	32.86
37	E13b_E14a	KnownJunction	0	1.50	0.00	3.62	1.06	2.03	1.50	2.15
38	ER13b	ExonRegion	0	2.56	0.54	3.69	2.36	1.98	2.45	4.20
39	ER14a	ExonRegion	0	19.12	11.56	19.12	12.57	11.39	10.55	37.15
40	E14a_E15a	KnownJunction	1	4.77	0.00	0.76	2.95	2.14	3.32	15.97
41	E14a_E16a	KnownJunction	0	17.09	4.47	19.69	6.75	3.00	6.16	27.89
42	ER15a	ExonRegion	1	3.20	0.77	1.97	2.00	3.67	2.79	10.80
43	E15a_E16a	KnownJunction	1	4.16	2.31	0.53	3.25	3.04	4.53	11.19
44	ER16a	ExonRegion	0	20.40	16.56	22.24	14.35	16.80	10.43	39.58
45	E16a_E17a	KnownJunction	0	16.51	15.24	29.39	19.75	17.27	6.51	41.62
46	ER17a	ExonRegion	0	20.96	23.53	26.98	22.18	20.10	14.99	55.97
47	E17a_E18a	KnownJunction	0	34.40	22.44	35.62	28.55	20.68	20.18	51.39
48	ER18a	ExonRegion	0	28.64	24.48	32.50	25.62	20.69	15.47	57.18
49	E18a_E19a	KnownJunction	0	24.63	21.15	30.54	21.05	16.74	9.54	45.47
50	ER19a	ExonRegion	0	25.62	24.02	33.15	22.70	25.94	8.49	45.98
51	E19a_E20a	KnownJunction	0	23.70	28.37	31.38	16.42	15.35	15.49	49.56
52	ER20a	ExonRegion	0	18.45	27.69	35.11	19.24	18.11	13.15	53.65
53	E20a_E21a	KnownJunction	1	13.94	28.77	45.15	19.05	28.63	12.11	41.58
54	ER21a	ExonRegion	0	20.57	30.07	34.34	23.04	22.58	16.96	54.38
55	E21a_E22a	KnownJunction	0	21.15	21.73	33.51	15.93	12.82	24.17	53.31
56	ER22a	ExonRegion	0	23.22	24.60	36.39	24.08	20.27	15.95	52.27
57	E22a_E23a	KnownJunction	0	25.92	10.46	34.72	20.72	15.70	17.26	57.54
58	ER23a	ExonRegion	0	29.77	24.35	37.45	23.80	26.77	9.76	59.08
59	E23_Da	KnownBoundary	0	4.21	3.15	2.03	2.98	0.00	0.00	2.38
60	E23a_E24a	KnownJunction	0	24.77	27.48	30.15	20.75	19.06	14.28	63.27
61	ER23b	ExonRegion	0	1.34	0.00	0.49	1.82	0.00	0.00	1.38
62	ER24a	ExonRegion	0	18.06	16.85	23.36	19.61	19.93	21.89	50.69
63	E24a_E25a	KnownJunction	1	12.57	8.14	21.70	16.66	26.88	12.03	52.17
64	I24	Intron	1	6.41	2.60	4.58	1.60	5.81	1.57	10.93
65	I24_SR1	SilentIntronRegion	1	6.44	2.62	4.60	1.61	5.84	1.58	10.98
66	ER25a	ExonRegion	0	24.42	15.48	35.47	21.75	25.55	14.67	64.53
67	E25a_E26a	KnownJunction	0	25.20	14.13	39.98	14.22	26.65	15.68	66.02
68	ER26a	ExonRegion	0	34.91	26.66	52.51	28.22	37.84	17.88	84.93
69	E26a_E27a	KnownJunction	0	25.89	34.28	49.07	25.49	42.26	21.95	80.37
70	ER27a	ExonRegion	0	26.91	32.51	57.02	26.69	39.96	13.88	91.46
71	E27a_E28a	KnownJunction	1	24.12	31.97	52.09	22.57	28.86	4.48	94.83
72	ER28a	ExonRegion	0	32.13	30.90	49.15	27.38	37.13	18.75	90.70
73	E28a_E29a	KnownJunction	0	44.30	38.28	53.95	31.80	49.10	26.18	96.34
74	ER29a	ExonRegion	0	33.82	25.83	48.75	25.93	37.98	24.85	98.48
75	E29a_E30a	KnownJunction	0	32.08	19.23	35.35	17.42	28.47	24.41	99.99
76	I29_AR1	ActiveIntronRegion	0	22.64	7.32	13.19	7.41	4.87	0.81	6.22
77	ER30a	ExonRegion	0	46.22	29.58	43.17	27.70	44.87	18.50	98.90
78	E30a_E31a	KnownJunction	1	13.55	18.05	16.64	21.46	11.53	16.32	59.35
79	E31_Aa	NovelBoundary	1	5.64	12.79	5.46	7.42	4.26	2.28	10.98
80	ER31a	ExonRegion	0	23.80	15.11	21.02	24.26	28.09	13.21	50.11
81	E31a_E32a	KnownJunction	0	37.20	12.72	35.19	17.37	29.18	17.69	58.59
82	ER32a	ExonRegion	0	33.07	12.06	28.70	18.65	24.62	15.63	60.01
83	E32a_E33a	KnownJunction	0	30.54	10.59	21.67	17.12	29.58	11.39	68.62
84	E33_Aa	NovelBoundary	1	19.34	6.20	11.65	5.74	7.26	2.81	3.55
85	ER33a	ExonRegion	0	57.44	20.49	46.71	29.63	47.62	20.65	96.31
86	E33a_E34a	KnownJunction	0	79.18	34.65	61.09	39.17	70.03	17.66	108.78
87	ER34a	ExonRegion	0	32.28	18.17	34.12	19.45	25.19	15.97	49.90