Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SNX32	Gene	0	3.82	2.69	7.34	3.77	6.18	2.99	2.73
2	308342	Transcript	0	2.06	1.76	7.49	2.65	6.78	1.60	2.54
3	IG23_AR10	ActiveIntergenicRegion	0	15.04	1.38	2.59	1.56	8.77	6.71	1.14
4	ER1a	ExonRegion	0	2.40	0.63	1.19	1.16	4.74	1.14	1.57
5	E1a_E2a	KnownJunction	0	0.00	0.00	2.40	0.00	3.11	0.00	0.00
6	I1_SR2	SilentIntronRegion	0	10.34	2.38	3.93	3.47	2.05	5.55	1.09
7	I1_AR2	ActiveIntronRegion	0	18.52	5.05	4.49	4.54	0.85	7.05	3.17
8	E2_Aa	NovelBoundary	0	17.37	5.12	4.31	7.12	0.00	8.33	2.67
9	ER2a	ExonRegion	0	10.58	11.80	6.93	2.71	2.91	1.79	2.85
10	E2_Da	NovelBoundary	0	36.85	9.98	6.70	15.01	0.00	10.13	4.40
11	E2a_E3a	KnownJunction	0	0.67	3.81	4.58	2.55	6.43	0.00	1.15
12	I2	Intron	0	10.50	4.12	4.62	5.62	0.49	8.57	3.18
13	I2_AR1	ActiveIntronRegion	0	10.56	4.15	4.65	5.66	0.49	8.62	3.20
14	E3_Aa	NovelBoundary	0	3.74	0.00	4.14	4.93	0.00	14.79	1.39
15	ER3a	ExonRegion	0	2.78	3.63	4.35	0.63	4.66	4.99	2.30
16	E3_Da	NovelBoundary	0	6.89	4.94	5.42	1.54	1.94	8.74	5.06
17	E3a_E4a	KnownJunction	0	0.82	2.89	0.85	3.17	3.25	0.00	1.71
18	ER4a	ExonRegion	0	4.72	3.76	6.97	4.48	5.60	5.30	2.73
19	E4_Da	NovelBoundary	0	15.97	6.99	4.34	15.90	3.23	8.98	0.69
20	E4a_E5a	KnownJunction	0	0.00	0.00	9.46	1.68	6.41	0.00	3.70
21	E5_Aa	NovelBoundary	0	21.46	5.41	11.53	12.62	2.05	10.85	0.86
22	ER5a	ExonRegion	0	5.84	3.72	10.95	4.97	6.33	6.69	4.15
23	E5_Da	NovelBoundary	0	14.97	3.10	4.44	4.80	1.08	6.41	0.89
24	E5a_E6a	KnownJunction	0	0.00	0.00	6.78	0.00	5.76	0.00	2.55
25	E6_Aa	NovelBoundary	0	11.40	5.46	5.23	3.03	0.00	13.29	2.84
26	ER6a	ExonRegion	0	6.03	4.32	16.29	5.83	9.03	4.45	3.35
27	E6_Da	NovelBoundary	0	10.46	6.09	8.19	7.23	0.00	12.68	3.11
28	E6a_E7a	KnownJunction	0	0.00	0.00	12.55	1.68	7.42	0.00	1.75
29	I6	Intron	0	10.16	4.19	4.46	4.84	0.00	10.41	2.05
30	I6_SR1	SilentIntronRegion	0	12.28	4.52	5.07	5.75	0.00	12.30	2.55
31	E7_Aa	NovelBoundary	0	13.17	2.94	3.52	19.61	0.00	17.29	2.01
32	ER7a	ExonRegion	0	3.02	2.57	11.72	1.93	9.42	8.78	2.31
33	E7_Da	NovelBoundary	0	10.46	5.20	2.89	15.06	0.00	10.26	0.00
34	E7a_E8a	KnownJunction	0	0.00	0.00	9.13	3.82	7.91	0.00	0.64
35	E8_Aa	NovelBoundary	0	11.53	3.86	4.38	15.69	0.00	5.74	0.00
36	ER8a	ExonRegion	0	0.53	1.18	12.68	4.17	8.05	0.02	1.21
37	E8_Da	NovelBoundary	0	7.49	3.89	8.22	8.45	1.06	3.83	0.00
38	E8a_E9a	KnownJunction	0	0.92	0.00	9.17	0.00	14.09	0.00	3.05
39	E9_Aa	NovelBoundary	0	4.79	7.88	3.49	4.82	1.08	14.02	0.89
40	ER9a	ExonRegion	0	0.46	0.00	9.25	0.12	11.01	0.03	4.28
41	E9_Da	NovelBoundary	0	9.03	10.46	2.37	12.30	3.53	16.70	0.72
42	E9a_E10a	KnownJunction	0	0.75	0.00	6.48	0.00	7.08	0.00	2.52
43	I9	Intron	0	10.02	7.08	6.58	9.29	0.92	11.21	0.71
44	I9_AR1	ActiveIntronRegion	0	11.34	5.99	4.96	7.39	0.92	14.10	1.21
45	I9_SR1	SilentIntronRegion	0	9.60	7.48	7.16	9.98	0.93	10.26	0.55
46	E10_Aa	NovelBoundary	0	4.06	5.73	5.37	9.16	0.00	5.92	0.00
47	ER10a	ExonRegion	0	0.47	0.00	6.41	7.87	5.90	3.14	3.71
48	E10_Da	NovelBoundary	0	5.76	4.68	4.50	8.67	0.00	6.54	0.00
49	E10a_E11a	KnownJunction	0	0.00	0.00	5.68	2.98	3.16	0.00	2.69
50	ER11a	ExonRegion	0	2.29	1.73	5.41	2.16	7.31	0.58	1.97
51	E11a_E12a	KnownJunction	0	0.00	0.00	7.06	0.00	8.46	0.00	3.63
52	ER12a	ExonRegion	0	1.66	0.85	8.99	2.97	7.61	1.08	2.83
53	E12a_E13a	KnownJunction	0	3.07	1.23	6.28	5.85	8.74	0.00	3.88
54	E13_Aa	NovelBoundary	0	9.40	0.00	5.72	8.89	1.01	0.00	2.62
55	ER13a	ExonRegion	0	4.40	1.81	5.74	5.49	5.08	2.00	3.00
56	IG24	Intergenic	0	14.29	2.21	5.49	4.20	1.32	4.79	0.64
57	IG24_SR1	SilentIntergenicRegion	0	13.18	1.32	5.09	3.47	0.94	6.66	0.42
58	IG24_AR1	ActiveIntergenicRegion	0	15.59	3.09	5.52	4.95	1.54	3.45	0.62
59	IG24_SR2	SilentIntergenicRegion	0	14.41	2.43	14.39	7.48	4.79	3.68	0.90
60	IG24_AR2	ActiveIntergenicRegion	0	12.20	1.09	5.91	2.92	1.27	4.86	1.48