Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TRIM34	Gene	0	12.66	4.82	3.72	3.62	59.31	5.13	12.71
2	278302	Transcript	0	0.00	0.00	0.00	0.00	24.17	0.00	0.00
3	380107	Transcript	0	0	0	0	0	0	0	0
4	396867	Transcript	0	0	0	0	0	0	0	0
5	380097	Transcript	0	0	0	0	0	0	0	0
6	337072	Transcript	0	0	0	0	0	0	0	0
7	380091	Transcript	0	0	0	0	0	0	0	0
8	380090	Transcript	0	0	0	0	0	0	0	0
9	380109	Transcript	0	23.09	25.09	7.78	51.45	0.00	49.85	23.13
10	380089	Transcript	0	13.78	10.28	11.02	9.34	11.79	7.82	7.02
11	354852	Transcript	0	13.91	3.37	2.59	0.00	40.70	6.34	15.57
12	396866	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	24.17	0.00	0.00
14	ER1b	ExonRegion	0	0.00	0.00	0.00	0.00	167.58	0.00	0.00
15	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	37.90	0.00	0.00
16	ER2a	ExonRegion	0	5.30	0.36	0.38	0.00	5.34	2.88	4.49
17	E2a_E3a	KnownJunction	0	6.41	0.00	0.52	0.00	14.48	0.00	6.94
18	ER3a	ExonRegion	0	6.54	0.00	0.73	0.72	24.62	0.02	5.56
19	E3_Ab	KnownBoundary	0	6.31	0.00	0.53	1.68	12.49	0.00	6.86
20	ER3b	ExonRegion	0	5.70	0.00	0.88	0.79	76.89	0.78	7.44
21	E3_Da	KnownBoundary	0	1.62	0.00	0.00	1.63	26.81	0.00	4.64
22	E3a_E3d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	E3a_E3e	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	0.00	0.00
24	ER3c	ExonRegion	0	3.46	0.00	0.81	1.25	28.43	0.00	4.12
25	ER3d	ExonRegion	0	3.56	0.00	1.80	1.01	38.44	0.00	5.50
26	E3_Ad	KnownBoundary	0	3.94	0.00	2.36	0.00	48.27	0.00	5.13
27	E3_Ae	KnownBoundary	0	25.94	40.77	8.90	36.74	79.42	24.52	19.13
28	ER3e	ExonRegion	0	5.84	0.00	2.33	1.32	57.07	0.00	7.25
29	E3_Db	KnownBoundary	0	28.01	32.45	13.39	78.94	43.52	57.35	36.85
30	E3b_E3f	KnownJunction	0	46.18	50.18	15.56	102.89	0.00	99.70	46.26
31	E3_Af	KnownBoundary	0	48.80	80.23	5.25	89.35	117.45	84.55	52.24
32	ER3f	ExonRegion	0	7.51	0.50	1.29	2.72	68.32	0.17	6.93
33	ER3g	ExonRegion	0	7.68	1.21	0.68	3.74	66.73	1.23	6.88
34	ER3h	ExonRegion	0	6.81	1.11	1.01	2.24	63.60	1.26	5.16
35	E3c_E4a	KnownJunction	0	4.54	0.00	1.22	0.00	53.32	0.00	2.77
36	ER4a	ExonRegion	0	4.85	0.00	2.03	0.00	56.55	1.38	3.04
37	E4a_E5a	KnownJunction	0	3.71	0.00	2.28	1.08	41.24	3.24	2.85
38	ER5a	ExonRegion	0	5.62	2.34	0.97	0.92	72.41	2.69	5.50
39	E5a_E6a	KnownJunction	0	4.17	1.13	0.83	0.00	54.52	1.07	7.80
40	E5b_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	ER5b	ExonRegion	0	0.00	0.00	0.00	0.00	1.46	0.00	0.00
42	E6a_E7b	KnownJunction	0	2.69	1.26	0.00	1.68	78.17	2.68	5.23
43	ER6a	ExonRegion	0	4.41	1.53	0.71	1.25	84.15	2.08	9.21
44	ER7a	ExonRegion	0	0.20	0.06	0.07	0.07	4.86	0.13	0.50
45	ER7b	ExonRegion	0	9.33	0.68	1.36	0.42	104.41	1.66	8.45
46	E8a_E9a	KnownJunction	0	6.61	1.13	1.70	0.00	115.52	2.36	5.53
47	E8a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	ER8a	ExonRegion	0	7.23	0.58	1.43	0.05	121.60	1.77	4.55
49	E9_Aa	NovelBoundary	0	0.82	1.16	0.00	0.00	23.03	0.00	0.00
50	ER9a	ExonRegion	0	14.32	3.69	2.70	0.99	139.16	4.21	9.25
51	E9_Da	KnownBoundary	0	20.31	5.04	3.20	0.00	207.52	3.43	16.21
52	ER9b	ExonRegion	0	11.84	4.12	3.24	1.13	103.01	1.75	6.74
53	E9_Db	KnownBoundary	0	5.19	2.65	0.86	0.00	67.34	0.00	5.93
54	ER9c	ExonRegion	0	5.35	0.46	2.09	0.35	58.72	2.09	4.76
55	E10_Aa	NovelBoundary	0	97.75	48.10	92.46	28.93	10.81	45.77	39.40
56	ER10a	ExonRegion	0	40.56	30.10	32.64	25.54	34.88	22.24	21.06
57	E10a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
58	ER11a	ExonRegion	0	8.70	2.06	1.78	0.00	20.01	3.72	9.25
59	E11a_E13a	KnownJunction	0	19.13	4.68	3.41	0.00	61.39	8.95	21.90
60	ER12a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
61	ER13a	ExonRegion	0	7.89	5.63	1.71	6.33	13.99	10.39	16.88
62	E13_Da	NovelBoundary	0	0.00	1.23	0.00	5.91	0.00	9.89	0.00
63	E13a_E14a	KnownJunction	0	6.96	1.29	0.69	1.68	12.66	1.21	19.73
64	ER14a	ExonRegion	0	8.79	4.33	1.52	2.97	10.48	7.87	15.23
65	E14a_E15a	KnownJunction	0	6.59	5.41	3.82	1.68	10.86	3.67	11.72
66	ER15a	ExonRegion	0	11.22	4.37	2.94	4.19	13.25	4.29	20.79
67	E15a_E16a	KnownJunction	0	16.01	0.00	1.60	2.17	14.62	0.00	12.77
68	E16a_E17a	KnownJunction	0	16.61	1.63	3.89	0.00	16.71	0.00	16.64
69	ER16a	ExonRegion	0	21.42	1.21	4.39	0.98	20.70	0.00	21.62
70	Ix	Intron	0	2.24	5.15	2.53	8.28	1.15	11.00	0.57
71	Ix_AR1	ActiveIntronRegion	0	2.79	3.99	3.43	8.81	1.42	14.42	0.56
72	Ix_SR1	SilentIntronRegion	0	2.04	6.60	2.37	8.70	1.14	9.54	0.61
73	E17_Aa	NovelBoundary	0	2.82	4.07	0.75	6.64	0.00	24.90	0.00
74	ER17a	ExonRegion	0	21.85	1.37	5.69	2.17	22.80	1.87	30.07
75	E17a_E18a	KnownJunction	0	28.31	0.00	2.92	1.60	29.55	0.00	28.39
76	Ix_AR2	ActiveIntronRegion	0	1.32	4.57	1.72	5.39	1.09	8.17	0.00
77	ER18a	ExonRegion	0	25.10	1.26	3.79	1.25	27.29	1.59	27.06
78	ER19a	ExonRegion	0	19.14	7.34	3.27	6.21	27.82	8.38	23.88
79	ER19b	ExonRegion	0	0.77	0.73	0.41	2.49	0.49	1.23	0.00