Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C10orf84	Gene	0	58.26	55.20	77.91	56.10	44.83	52.72	56.33
2	369170	Transcript	0	6.45	2.50	4.87	3.51	2.32	5.74	4.12
3	369171	Transcript	1	51.17	32.87	100.35	66.32	49.59	49.37	45.17
4	369183	Transcript	0	25.15	19.99	32.02	24.80	27.35	22.13	29.02
5	369172	Transcript	0	1.02	0.59	0.48	0.00	4.24	0.00	0.00
6	ER1a	ExonRegion	0	10.19	8.99	16.75	7.90	12.69	9.89	9.71
7	ER1b	ExonRegion	0	57.93	50.65	101.23	66.47	84.11	47.44	89.70
8	E1a_E2a	KnownJunction	0	49.44	54.70	68.13	51.18	90.00	33.61	115.83
9	E1a_E3a	KnownJunction	0	51.17	32.87	100.35	66.32	49.59	49.37	45.17
10	E2_Aa	NovelBoundary	1	27.59	2.73	36.66	9.37	3.16	1.18	4.53
11	ER2a	ExonRegion	0	39.57	65.50	54.02	50.30	27.93	36.94	73.32
12	E2a_E3a	KnownJunction	0	71.17	85.36	92.49	69.79	84.00	56.47	105.03
13	ER3a	ExonRegion	0	110.18	147.14	176.33	131.11	80.98	128.35	132.25
14	E3a_E4a	KnownJunction	0	136.39	156.42	202.00	147.92	85.09	135.93	138.26
15	ER4a	ExonRegion	0	151.98	160.09	228.81	155.37	77.67	142.88	126.79
16	E4a_E5a	KnownJunction	0	151.71	127.10	195.77	125.95	89.10	106.48	99.06
17	E5a_E6a	KnownJunction	0	136.21	92.92	182.60	107.06	113.51	79.43	98.16
18	ER5a	ExonRegion	0	195.88	143.63	249.93	135.68	120.62	125.29	131.68
19	ER6a	ExonRegion	0	164.02	149.21	189.87	151.58	80.86	110.61	118.34
20	E6a_E7a	KnownJunction	0	168.84	166.32	188.70	124.40	60.68	122.85	101.72
21	ER7a	ExonRegion	0	132.58	151.17	176.80	132.95	80.98	120.76	106.68
22	E7a_E8a	KnownJunction	0	11.15	3.26	6.73	6.12	3.32	10.10	6.23
23	E7a_E10a	KnownJunction	0	101.91	128.99	151.81	123.37	107.20	91.63	98.90
24	ER8a	ExonRegion	0	8.22	4.23	7.88	4.39	3.63	6.59	5.83
25	E8a_E10a	NovelJunction	1	6.08	4.23	15.86	1.44	3.18	12.14	5.07
26	ER9a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.53	0.29
27	I9	Intron	0	13.26	8.34	19.00	5.01	2.55	2.98	5.18
28	I9_AR2	ActiveIntronRegion	0	21.38	4.86	22.06	3.74	1.71	5.60	4.29
29	I9_SR3	SilentIntronRegion	0	11.89	6.10	19.45	2.76	1.77	2.41	5.19
30	I9_AR4	ActiveIntronRegion	0	14.67	9.30	20.83	5.95	3.21	4.21	5.88
31	I9_SR4	SilentIntronRegion	0	23.01	9.20	29.92	7.54	3.42	4.09	6.72
32	I9_AR5	ActiveIntronRegion	0	14.19	7.31	23.73	6.01	3.00	3.51	6.32
33	I9_SR5	SilentIntronRegion	0	14.29	11.46	17.53	6.76	3.76	2.93	6.14
34	I9_AR6	ActiveIntronRegion	0	12.04	4.86	16.60	8.73	4.05	4.90	5.40
35	I9_AR7	ActiveIntronRegion	0	16.06	11.13	23.99	11.09	3.92	6.00	7.88
36	I9_AR8	ActiveIntronRegion	1	15.42	17.56	23.22	9.23	4.53	3.83	8.68
37	I9_SR6	SilentIntronRegion	1	9.37	14.87	13.05	4.29	5.33	1.91	6.65
38	I9_AR9	ActiveIntronRegion	0	17.50	19.69	20.11	10.69	6.68	8.45	7.11
39	ER10a	ExonRegion	0	139.70	146.33	168.50	148.24	95.51	132.92	106.21
40	E10a_E11a	KnownJunction	0	136.66	139.97	167.73	122.94	78.63	137.38	87.52
41	ER11a	ExonRegion	0	129.22	95.09	165.33	105.12	88.58	121.46	90.88
42	E11_Da	KnownBoundary	0	130.16	66.94	166.22	82.22	104.06	100.10	81.82
43	ER11b	ExonRegion	0	72.11	36.09	92.88	45.82	59.10	56.72	60.70
44	E11_Db	KnownBoundary	1	11.90	16.24	24.86	18.58	6.75	21.36	20.94
45	E11b_E12a	KnownJunction	0	0.92	1.60	0.00	0.00	0.00	0.00	0.00
46	ER11c	ExonRegion	0	25.15	19.99	32.02	24.80	27.35	22.13	29.02
47	E11_Dc	NovelBoundary	0	12.60	8.98	17.98	18.02	9.59	9.35	14.15
48	I11_SR1	SilentIntronRegion	0	17.16	13.35	15.34	11.41	14.59	6.23	11.27
49	I11_AR2	ActiveIntronRegion	0	8.42	10.39	14.78	14.26	8.24	9.46	9.48
50	I11_SR2	SilentIntronRegion	0	8.42	7.80	11.83	14.24	1.78	12.74	5.08
51	I11_SR4	SilentIntronRegion	0	3.54	7.16	5.90	12.32	0.51	11.18	5.23
52	I11_AR5	ActiveIntronRegion	0	8.20	14.57	7.92	18.27	0.96	22.77	7.99
53	I11_AR7	ActiveIntronRegion	0	7.65	9.40	5.22	14.87	0.68	13.59	5.35
54	I11_SR6	SilentIntronRegion	0	10.25	11.80	6.66	20.12	0.69	14.41	5.40
55	I11_AR8	ActiveIntronRegion	0	8.65	7.25	10.59	14.74	0.29	11.40	7.54
56	I11_AR9	ActiveIntronRegion	0	6.65	11.51	6.88	20.22	1.29	17.75	6.03
57	ER12a	ExonRegion	0	3.15	0.76	1.92	0.00	16.94	0.00	0.00
58	E12_Da	NovelBoundary	1	40.62	10.69	30.91	19.32	17.22	15.28	8.80
59	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	ER13a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00