Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MMS19	Gene	0	128.82	130.20	172.10	124.24	440.12	86.87	168.84
2	370782	Transcript	0	2.43	1.05	2.15	1.49	8.10	1.44	0.90
3	327277	Transcript	0	5.16	9.99	11.06	8.58	5.19	3.69	8.59
4	327253	Transcript	0	57.66	76.74	95.45	67.48	0.00	25.65	81.63
5	327238	Transcript	0	4.17	3.18	7.89	3.28	8.18	11.85	0.80
6	355839	Transcript	0	0	0	0	0	0	0	0
7	ER1a	ExonRegion	0	0.00	0.10	0.02	0.10	0.01	0.04	0.01
8	E1a_E2b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER2a	ExonRegion	0	0.00	4.45	1.13	7.48	2.70	3.27	0.45
10	ER2b	ExonRegion	0	7.76	17.71	12.81	25.23	11.11	18.91	11.99
11	E2a_E3a	KnownJunction	0	5.42	27.80	13.05	14.52	25.01	15.95	16.52
12	ER3a	ExonRegion	0	17.49	41.97	24.34	37.46	39.85	27.22	33.87
13	E3a_E4a	KnownJunction	0	31.18	45.79	41.70	55.10	56.30	32.21	43.17
14	ER4a	ExonRegion	0	68.41	77.05	100.55	82.41	208.60	71.52	100.11
15	E4a_E5a	KnownJunction	0	56.48	80.26	99.50	96.36	278.75	77.48	122.49
16	ER5a	ExonRegion	0	59.96	132.08	103.90	107.91	270.58	100.97	122.85
17	E5a_E6a	KnownJunction	0	76.42	151.24	125.84	123.29	260.40	114.54	112.89
18	ER6a	ExonRegion	0	93.68	137.55	147.55	123.28	272.95	104.34	154.69
19	E6a_E7a	KnownJunction	0	89.17	134.59	171.04	115.49	342.47	125.40	190.21
20	ER7a	ExonRegion	0	90.71	138.65	169.18	129.52	404.81	116.01	166.23
21	E7a_E8a	KnownJunction	0	93.81	114.25	166.98	113.32	362.34	91.17	124.33
22	E7a_E9a	NovelJunction	0	9.68	16.92	5.40	9.35	48.62	9.65	10.13
23	ER8a	ExonRegion	0	120.04	135.78	200.69	110.39	434.44	82.28	159.88
24	E8a_E9a	KnownJunction	0	134.44	148.62	200.57	107.20	414.95	101.54	153.26
25	ER9a	ExonRegion	0	174.37	182.07	232.93	129.64	560.31	114.39	177.18
26	E9a_E10a	KnownJunction	0	205.24	174.23	249.41	143.94	529.45	106.13	174.79
27	E10_Aa	NovelBoundary	0	6.09	14.08	13.78	18.80	7.15	30.44	4.99
28	ER10a	ExonRegion	0	216.27	200.28	279.40	148.69	523.40	137.37	194.17
29	E10a_E11a	KnownJunction	0	203.40	191.65	257.23	150.65	480.44	150.11	163.71
30	ER11a	ExonRegion	0	191.06	162.39	240.11	143.92	450.32	121.36	163.23
31	E11a_E12a	KnownJunction	0	179.20	160.65	233.37	140.36	442.18	109.45	166.88
32	ER12a	ExonRegion	0	146.54	129.49	187.95	110.68	418.50	86.83	154.21
33	E12a_E13a	KnownJunction	0	95.20	67.18	133.92	58.25	279.61	44.94	105.88
34	E12a_E14a	NovelJunction	0	9.50	15.00	14.59	7.40	5.51	11.85	12.12
35	E12a_E15a	KnownJunction	0	4.17	3.18	7.89	3.28	8.18	11.85	0.80
36	ER13a	ExonRegion	0	71.78	89.33	115.85	74.52	212.05	49.35	101.65
37	E13a_E14a	KnownJunction	0	71.90	101.72	121.87	85.15	292.01	45.24	129.43
38	ER14a	ExonRegion	0	104.51	107.63	166.70	103.30	341.53	63.17	158.09
39	E14a_E15a	KnownJunction	0	113.58	131.59	153.23	118.60	324.88	60.89	133.40
40	ER15a	ExonRegion	0	134.13	124.96	194.43	122.19	337.60	56.97	162.67
41	E15a_E16a	KnownJunction	0	169.00	120.35	238.27	142.85	418.48	69.49	195.60
42	ER16a	ExonRegion	0	135.51	120.90	216.77	121.86	457.19	66.16	172.66
43	E16a_E17a	KnownJunction	0	94.82	112.91	159.76	106.52	342.27	41.11	114.69
44	ER17a	ExonRegion	0	95.30	116.34	169.81	103.51	358.06	51.97	149.09
45	E17a_E18a	KnownJunction	0	91.98	116.80	153.82	106.39	349.94	53.33	157.09
46	ER18a	ExonRegion	0	87.76	154.56	146.90	111.79	387.17	67.73	168.62
47	E18a_E19a	KnownJunction	0	96.13	164.30	153.36	130.31	477.33	77.10	168.49
48	ER19a	ExonRegion	0	129.72	159.81	189.55	145.01	545.93	75.52	215.86
49	E19a_E20a	KnownJunction	0	145.00	170.66	198.43	162.00	705.67	87.66	233.16
50	ER20a	ExonRegion	0	237.39	165.13	267.91	175.55	781.16	98.89	275.83
51	E20a_E21a	KnownJunction	0	211.78	157.44	236.09	185.76	595.25	101.30	221.76
52	ER21a	ExonRegion	0	321.03	157.57	325.92	181.53	1048.91	89.66	313.54
53	E21a_E22a	KnownJunction	0	316.44	154.58	323.29	161.30	1069.67	69.38	338.81
54	ER22a	ExonRegion	0	297.27	177.53	303.71	191.84	805.02	116.89	288.70
55	E22a_E23a	KnownJunction	0	318.14	173.47	278.07	180.29	619.87	114.89	276.35
56	E22b_E23a	KnownJunction	0	1.70	1.21	0.00	1.68	1.06	0.00	0.00
57	ER22b	ExonRegion	0	1.54	1.21	5.31	2.49	1.08	0.00	0.45
58	ER23a	ExonRegion	0	265.95	171.24	278.32	173.80	799.37	93.26	278.42
59	E23a_E24a	KnownJunction	0	217.44	119.90	255.22	99.94	945.17	60.43	213.41
60	E23a_E25a	KnownJunction	0	12.25	27.53	27.88	21.56	13.42	11.07	25.32
61	ER24a	ExonRegion	0	183.44	114.62	227.26	96.41	700.49	57.33	174.51
62	E24_Da	KnownBoundary	0	90.53	50.78	96.55	38.14	199.31	34.57	70.85
63	E24a_E24b	KnownJunction	0	57.66	76.74	95.45	67.48	0.00	25.65	81.63
64	E24_Ab	KnownBoundary	0	78.43	40.62	82.44	38.58	103.85	34.33	71.92
65	ER24b	ExonRegion	0	154.76	121.24	179.10	92.77	415.13	68.41	147.06
66	ER24c	ExonRegion	0	130.88	129.10	153.63	97.59	400.15	65.48	147.56
67	E24b_E25a	KnownJunction	0	134.79	132.15	154.35	90.89	435.40	58.69	147.41
68	ER25a	ExonRegion	0	154.97	150.86	211.48	128.72	525.47	100.05	199.89
69	E25_Da	NovelBoundary	1	54.89	8.33	77.80	2.74	3.14	6.35	8.61
70	E25a_E26a	KnownJunction	0	140.03	168.87	206.89	121.75	557.37	121.86	216.50
71	ER26a	ExonRegion	0	155.35	176.92	215.32	129.99	587.87	121.74	241.18
72	E26a_E27a	KnownJunction	0	141.91	168.66	186.58	130.04	512.90	110.52	233.56
73	ER27a	ExonRegion	0	146.34	178.84	217.43	167.45	579.49	142.05	260.91
74	E27a_E28a	KnownJunction	0	131.92	122.71	172.36	149.71	482.98	142.55	180.56
75	ER28a	ExonRegion	0	159.68	147.16	190.97	194.78	646.93	121.24	215.10
76	E28a_E29a	KnownJunction	0	167.97	168.16	215.24	205.78	605.83	109.32	265.92
77	ER29a	ExonRegion	0	123.24	166.65	159.52	172.48	462.95	117.68	202.92
78	E29a_E30a	KnownJunction	0	138.49	185.03	160.43	212.94	389.89	124.24	232.83
79	ER30a	ExonRegion	0	128.19	163.74	169.33	203.28	750.79	108.68	220.15
80	E30a_E31a	KnownJunction	0	95.72	112.49	139.44	167.40	527.17	77.13	150.29
81	ER31a	ExonRegion	0	90.64	114.18	115.20	140.40	393.60	88.88	131.87
82	E31a_E32a	KnownJunction	0	86.22	125.10	99.86	115.62	381.73	120.60	139.17
83	ER32a	ExonRegion	0	70.21	97.53	97.10	98.70	251.51	89.12	97.95
84	ER32b	ExonRegion	0	7.30	3.04	6.44	4.36	24.30	4.29	2.70
85	IG14_AR2	ActiveIntergenicRegion	0	2.67	2.72	4.83	9.17	3.99	7.27	4.46