Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MXI1	Gene	0	99.01	82.54	115.38	60.84	33.76	62.77	61.10
2	332674	Transcript	0	0.39	3.79	0.00	2.18	0.00	7.72	3.94
3	369623	Transcript	0	0	0	0	0	0	0	0
4	361248	Transcript	0	0.23	0.00	0.00	0.00	0.01	0.00	0.02
5	239007	Transcript	0	0	0	0	0	0	0	0
6	369619	Transcript	0	0	0	0	0	0	0	0
7	393134	Transcript	0	0	0	0	0	0	0	0
8	369614	Transcript	0	0.09	0.00	1.66	0.14	1.75	0.00	0.22
9	369613	Transcript	0	0.21	0.94	0.00	0.00	1.80	0.00	0.15
10	369612	Transcript	0	1.24	0.45	2.09	0.70	1.71	0.46	0.75
11	ER1a	ExonRegion	0	0.39	3.79	0.00	2.18	0.00	7.72	3.94
12	E1_Ab	KnownBoundary	0	1.47	5.73	0.00	2.93	0.00	5.55	3.61
13	ER1b	ExonRegion	1	5.98	10.72	1.98	3.48	5.98	16.49	10.27
14	E1a_E7a	KnownJunction	1	22.88	25.72	5.27	7.23	12.63	25.65	31.36
15	ER2a	ExonRegion	0	0.46	0.00	0.00	0.00	0.02	0.00	0.05
16	E2a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	ER3a	ExonRegion	0	0.51	2.82	0.35	0.97	0.00	1.70	0.26
18	E3_Ab	KnownBoundary	0	3.94	12.03	2.74	4.14	0.00	7.16	2.08
19	ER3b	ExonRegion	1	11.72	48.08	14.05	14.39	2.19	19.28	7.11
20	E3a_E7a	KnownJunction	1	44.08	99.60	51.99	25.87	6.82	60.11	20.32
21	ER4a	ExonRegion	0	0.09	0.00	1.66	0.14	1.75	0.00	0.22
22	ER5a	ExonRegion	0	0.21	0.94	0.00	0.00	1.80	0.00	0.15
23	ER6a	ExonRegion	0	2.47	0.91	4.18	1.39	3.42	0.92	1.50
24	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	ER7a	ExonRegion	0	118.26	165.70	98.90	106.31	29.99	124.85	84.34
26	E7a_E8a	KnownJunction	0	94.92	125.84	85.40	87.37	31.51	69.60	69.54
27	E7a_E9a	KnownJunction	0	9.96	13.58	7.87	13.60	2.24	17.58	6.59
28	E8a_E9a	KnownJunction	0	142.68	118.17	124.49	90.38	42.19	98.44	63.19
29	ER8a	ExonRegion	0	143.03	158.46	139.54	124.36	38.74	109.77	84.62
30	I8_AR4	ActiveIntronRegion	1	1.54	2.85	4.26	12.19	0.77	13.02	0.93
31	ER9a	ExonRegion	0	231.36	231.07	227.12	166.77	74.89	190.06	126.50
32	E9a_E10a	KnownJunction	0	207.27	245.59	203.24	162.79	67.59	155.17	125.59
33	ER10a	ExonRegion	0	207.73	233.45	241.49	157.60	73.64	145.56	145.81
34	E10a_E11a	KnownJunction	0	158.89	170.95	201.92	140.58	68.05	127.46	150.85
35	ER11a	ExonRegion	0	168.42	171.34	211.51	128.44	71.22	123.08	146.43
36	E11_Da	KnownBoundary	0	200.20	107.71	198.53	102.11	96.82	102.59	123.18
37	ER11b	ExonRegion	0	227.51	134.68	223.14	108.77	64.97	117.84	112.84
38	E11_Db	KnownBoundary	0	140.15	96.52	126.04	71.28	40.99	84.63	53.47
39	ER11c	ExonRegion	0	255.29	142.37	227.91	110.31	70.15	143.38	82.68
40	E11_Dc	KnownBoundary	0	299.95	119.17	252.06	92.14	87.21	139.31	85.74
41	ER11d	ExonRegion	1	372.83	152.35	329.39	133.37	84.30	135.68	112.00
42	E11_Dd	KnownBoundary	0	247.50	130.91	261.11	88.91	55.97	73.67	75.78
43	ER11e	ExonRegion	0	101.44	76.17	130.33	59.28	36.27	58.77	64.21
44	IG40_AR1	ActiveIntergenicRegion	0	10.82	4.37	9.17	5.83	0.65	6.46	1.00
45	IG40_SR3	SilentIntergenicRegion	0	5.30	5.18	10.31	6.10	1.72	3.52	1.49
46	IG40_AR2	ActiveIntergenicRegion	0	7.06	4.91	9.00	4.11	6.13	5.67	3.19