Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PAX2	Gene	0	0.05	0.13	0.02	0.00	0.10	0.09	0.01
2	355243	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	370296	Transcript	0	0	0	0	0	0	0	0
4	370294	Transcript	0	0	0	0	0	0	0	0
5	361791	Transcript	0	0	0	0	0	0	0	0
6	370285	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	IG2_AR1	ActiveIntergenicRegion	0	10.52	11.03	22.54	19.36	62.82	6.21	35.36
8	IG2_AR2	ActiveIntergenicRegion	0	18.90	15.47	35.90	13.72	72.35	8.66	56.40
9	IG2_SR1	SilentIntergenicRegion	0	25.29	14.24	32.81	27.29	67.76	7.78	58.89
10	IG2_AR3	ActiveIntergenicRegion	0	17.57	20.55	29.06	19.01	79.26	6.06	43.12
11	IG2_AR4	ActiveIntergenicRegion	0	26.86	28.90	41.19	36.45	87.62	21.97	65.10
12	IG2_SR3	SilentIntergenicRegion	0	8.71	7.34	12.81	10.05	27.27	3.71	13.56
13	IG2_AR5	ActiveIntergenicRegion	0	8.71	8.34	13.40	10.47	31.53	4.91	15.86
14	IG2_SR4	SilentIntergenicRegion	0	4.55	7.40	5.71	9.15	26.50	4.36	5.51
15	IG2_AR7	ActiveIntergenicRegion	0	14.22	11.88	13.38	11.95	48.36	11.42	13.20
16	IG2_AR8	ActiveIntergenicRegion	0	7.76	7.25	6.99	8.64	20.43	3.77	7.61
17	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.13	0.00
18	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.67	0.00
20	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	E5a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	E7_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	ER7b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	ER8a	ExonRegion	0	0.00	0.00	0.00	0.00	0.39	0.00	0.00
35	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.95	0.00	0.00
36	ER9a	ExonRegion	0	0.00	0.00	0.00	0.00	0.73	0.00	0.00
37	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	E9a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	E9b_E11b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	ER9b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	ER10a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	ER11a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	ER11b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	ER12a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	E12_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	E12a_E12b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	E12_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
50	ER12b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	ER12c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	E12_Db	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	ER12d	ExonRegion	0	0.10	0.24	0.04	0.00	0.13	0.08	0.02